CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14334
KRH73797

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	KRH14334	AT3G20310.1	21798944
AT2G44040.1	KRH73797	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06536	Soybean	cytosol	54.65	98.43
KRH06535	Soybean	mitochondrion, plastid	38.95	88.16
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	68.31	67.34
Solyc01g098380.2.1	Tomato	plastid	62.5	64.76
PGSC0003DMT400073601	Potato	plastid	62.5	64.76
GSMUA_Achr1P02550_001	Banana	plastid	61.92	64.35
GSMUA_Achr4P25630_001	Banana	mitochondrion	55.23	64.19
AT3G59890.1	Thale cress	plastid	64.53	63.61
CDY30450	Canola	plastid	62.79	63.53
Bra037671.1-P	Field mustard	plastid	62.5	63.24
CDY23412	Canola	plastid	63.08	62.54
AT2G44040.1	Thale cress	plastid	63.08	62.54
CDX95582	Canola	plastid	63.08	62.36
CDX83447	Canola	plastid	63.08	62.36
Bra000338.1-P	Field mustard	plastid	63.08	62.36
TraesCS4D01G226800.1	Wheat	mitochondrion	58.72	61.96
TraesCS4B01G226100.1	Wheat	mitochondrion	57.85	61.04
Os02t0436400-01	Rice	plastid	60.17	60.35
TraesCS4A01G069000.2	Wheat	mitochondrion	57.27	60.24
Os03t0245100-01	Rice	mitochondrion	56.1	59.38
EER95181	Sorghum	mitochondrion	56.1	59.2
OQU80721	Sorghum	plastid	58.72	58.89
TraesCS1A01G102500.1	Wheat	plastid	58.14	58.65
Zm00001d049956_P002	Maize	plastid	58.14	58.31
TraesCS1D01G094400.1	Wheat	plastid	57.56	58.06
Zm00001d047935_P003	Maize	plasma membrane	54.94	57.45
HORVU4Hr1G063600.3	Barley	mitochondrion	55.52	56.01
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	58.14	49.51
TraesCS1B01G113300.2	Wheat	plastid	43.6	41.32
HORVU4Hr1G073970.1	Barley	cytosol	8.72	37.97

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	EntrezGene:100819889	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2
EMBL:ACUP02004185	InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	EnsemblPlantsGene:GLYMA_07G060300
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058
GO:GO:0009089	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0019877	GO:GO:0055114
GO:GO:0070402	UniProt:I1KHZ8	EnsemblPlants:KRH47978	ProteinID:KRH47978	ProteinID:KRH47978.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF4	MetaCyc:PWY-2941	MetaCyc:PWY-2942
MetaCyc:PWY-5097	SUPFAM:SSF51735	TIGRFAMs:TIGR02130	UniParc:UPI0002337ED3	:	:

Description

hypothetical protein

Coordinates

chr7:+:5353935..5357409

Molecular Weight (calculated)

37371.9 Da

IEP (calculated)

6.948

GRAVY (calculated)

-0.074

Length

344 amino acids

Sequence
(BLAST)

001: MATSLLKTQL NVFRRHHNHL ACFSNGASAG NSVPISQKRR SRSFPVVSMA ATPAQTSLEK SALSSKNTGL PIMVNACTGK MGKAVINAAE AAGLNVVPVS
101: FGCEEESGQT FQIGEKEFLV HGPSDRESAL ASVLDQYPNL IVVDYTIPNA VNGNAELYCK VGVPFVMGTT GGDRDLLHKT VLDSNIYAVI SPQMGKQVVA
201: FLAAMEIMAE QFPGAFSGYS LQVLESHQAS KVDASGTAKA VISCFNKLGV SFDMDQIKLI RDPRQQLEMV GVPEEHLSGH AFHMYHLTSP DDTVTFEFQH
301: NVCGRSIYAE GTVDAVLFLA KKIETKDHKR LYNMIDVLRE GNMR

Best Arabidopsis Sequence Match ( AT3G59890.1 )
(BLAST)

001: MAANGLMAAS SVFLHRPVHP HFSFSSRTNQ MVPLGFKGRV SFIGNVKRCF PVVLSMGKSE TFEEAGNSVA PGNGISIMVN GCSGKMGKAV IKAADSAGVN
101: IVPTSFGSVE EAGQTVEVCG KEILVHGPTE REKVLSSVFE KYPELIVVDY TIPSAVNDNA ELYGKVGVPF VMGTTGGDRT RLYKTVEESK IYAVISPQMG
201: KQVVAFLAAM EIMSEQFPGA FAGYSLEVME SHQASKLDAS GTAKAVISCF QKLGVSYDMD QIQLIRDPKQ QIEVVGVPEE HVSGHAFHLY HLTSPDKTVS
301: FEFQHNVCGR SIYAEGTVDA VLFLAKKIRS KAEKRIYNMI DVLREGNMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.