Factsheet for HORVU4Hr1G073970.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G099670.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	HORVU7Hr1G099670.1	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G094400.1	Wheat	plastid	75.95	17.6
TraesCS1B01G113300.2	Wheat	plastid	73.42	15.98
KRH06535	Soybean	mitochondrion, plastid	30.38	15.79
Os02t0436400-01	Rice	plastid	68.35	15.74
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	78.48	15.35
OQU80721	Sorghum	plastid	63.29	14.58
Zm00001d049956_P002	Maize	plastid	62.03	14.29
GSMUA_Achr1P02550_001	Banana	plastid	44.3	10.57
HORVU4Hr1G063600.3	Barley	mitochondrion	40.51	9.38
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	40.51	9.17
KRH47978	Soybean	mitochondrion	37.97	8.72
PGSC0003DMT400073601	Potato	plastid	34.18	8.13
Solyc01g098380.2.1	Tomato	plastid	32.91	7.83
AT3G59890.1	Thale cress	plastid	34.18	7.74
GSMUA_Achr4P25630_001	Banana	mitochondrion	27.85	7.43
AT2G44040.1	Thale cress	plastid	31.65	7.2
CDY23412	Canola	plastid	31.65	7.2
CDX95582	Canola	plastid	31.65	7.18
CDX83447	Canola	plastid	31.65	7.18
Bra000338.1-P	Field mustard	plastid	31.65	7.18
CDY30450	Canola	plastid	30.38	7.06
Bra037671.1-P	Field mustard	plastid	30.38	7.06
KRH06536	Soybean	cytosol	6.33	2.62

Protein Annotations

EnsemblPlants:HORVU4Hr1G073970.1	EnsemblPlantsGene:HORVU4Hr1G073970	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0008839	GO:GO:0009058	GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	InterPro:DHDPR_bac
KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	PANTHER:PTHR20836	PANTHER:PTHR20836:SF4	SEG:seg	UniParc:UPI000B46E37F
UniProt:A0A287PN27	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:592227063..592230109

Molecular Weight (calculated)

8677.3 Da

IEP (calculated)

5.673

GRAVY (calculated)

-0.435

Length

79 amino acids

Sequence
(BLAST)

1: MGKSVAEAVA AAGLQSVPVS FSAIEVPDGK LNICDRDIHI HDPCESESII RSIAKDYPDM TVQYPPTKTF KTNTEKKER

Best Arabidopsis Sequence Match ( AT3G59890.2 )
(BLAST)

001: MAASSVFLHR PVHPHFSFSS RTNQMVPLGF KGRVSFIGNV KRCFPVVLSM GKSETFEEAG NSVAPGNGIS IMVNGCSGKM GKAVIKAADS AGVNIVPTSF
101: GSVEEAGQTV EVCGKEILVH GPTEREKVLS SVFEKYPELI VVDYTIPSAV NDNAELYGKV GVPFVMGTTG GDRTRLYKTV EESKIYAVIS PQMGKQVVAF
201: LAAMEIMSEQ FPGAFAGYSL EVMESHQASK LDASGTAKAV ISCFQKLGVS YDMDQIQLIR DPKQQIEVVG VPEEHVSGHA FHLYHLTSPD KTVSFEFQHN
301: VCGRSIYAEG TVDAVLFLAK KIRSKAEKRI YNMIDVLREG NMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.