Factsheet for Bra000338.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035792.1-P
Bra038261.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	Bra035792.1-P	AT3G20310.1	21798944
AT2G44040.1	Bra038261.1-P	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83447	Canola	plastid	99.14	99.14
Bra037671.1-P	Field mustard	plastid	87.36	89.41
AT2G44040.1	Thale cress	plastid	88.79	89.05
KRH06536	Soybean	cytosol	46.55	84.82
Solyc01g098380.2.1	Tomato	plastid	64.66	67.77
PGSC0003DMT400073601	Potato	plastid	64.08	67.17
GSMUA_Achr4P25630_001	Banana	mitochondrion	54.31	63.85
GSMUA_Achr1P02550_001	Banana	plastid	60.34	63.44
KRH47978	Soybean	mitochondrion	62.36	63.08
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	63.22	63.04
Os03t0245100-01	Rice	mitochondrion	53.16	56.92
Os02t0436400-01	Rice	plastid	55.17	55.98
OQU80721	Sorghum	plastid	55.17	55.98
TraesCS4D01G226800.1	Wheat	mitochondrion	52.3	55.83
EER95181	Sorghum	mitochondrion	52.01	55.52
Zm00001d049956_P002	Maize	plastid	54.6	55.39
TraesCS4A01G069000.2	Wheat	mitochondrion	51.72	55.05
TraesCS4B01G226100.1	Wheat	mitochondrion	51.44	54.91
TraesCS1A01G102500.1	Wheat	plastid	53.45	54.55
TraesCS1D01G094400.1	Wheat	plastid	53.16	54.25
Zm00001d047935_P003	Maize	plasma membrane	50.29	53.19
HORVU4Hr1G063600.3	Barley	mitochondrion	49.43	50.44
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	53.74	46.29
KRH06535	Soybean	mitochondrion, plastid	17.24	39.47
TraesCS1B01G113300.2	Wheat	plastid	40.23	38.57
HORVU4Hr1G073970.1	Barley	cytosol	7.18	31.65

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	EnsemblPlantsGene:Bra000338
EnsemblPlants:Bra000338.1	EnsemblPlants:Bra000338.1-P	InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008839	GO:GO:0009058	GO:GO:0009089	GO:GO:0009987	GO:GO:0055114	GO:GO:0070402
UniProt:M4C810	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF4
SUPFAM:SSF51735	TIGRFAMs:TIGR02130	UniParc:UPI000253FDBA	:	:	:

Description

AT2G44040 (E=2e-173) | dihydrodipicolinate reductase family protein

Coordinates

chrA03:-:10622031..10623773

Molecular Weight (calculated)

37795.5 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.065

Length

348 amino acids

Sequence
(BLAST)

001: MATTNWLTAS SSVFLTRPVN PRLAFASRKN QTLGRSRVSF QGSVKRRLPV VISMTATEES GEKAVKSVLP GHGISIMVNG CSGKMGKAVI KAADSAGVNI
101: VPTSFGSAAE AGQTVEVCGK EITVHGPAER EKVLSSVFEK HPELIVVDYT IPSAVNDNAE LYSKVGVPFV MGTTGGDRNK LYETVEEARI YAVISPQMGK
201: QVVAFLAAME IMAEQFPGAF SGYSLEVMES HQASKLDASG TAKAVISCFQ DLGVSYDMDQ IQLIRDPKQQ IEMVGVPEEH VSGHAFHLYH LTSPDKTVSF
301: EFQHNVCGRS IYAEGTVDAV LFLAKKIRLK AEQRIYNMID VLREGNMR

Best Arabidopsis Sequence Match ( AT2G44040.1 )
(BLAST)

001: MATNGLMASS SVFLHRPRIA FASRTNQTVG KYGKGRVSFM GIGTRRLPVV LSMTAMADSG EEAVKSVLPG NGISIMVNGC SGKMGKAVIK AADSAGVNIV
101: PISFGSAGED GQRVEVCGKE ITVHGPTERE KVLSSVFEKH PELIVVDYTI PSAVNDNAEL YSKVGVPFVM GTTGGDRNKL YETVEEAKIY AVISPQMGKQ
201: VVAFLAAMEI MAEQFPGAFS GYSLDVMESH QASKLDASGT AKAVISCFQE LGVSYDMDQI QLIRDPKQQV EMVGVPEEHI SGHAFHLYHL TSPDETVSFE
301: FQHNVCGRSI YAEGTVDAVL FLAKKIRLKA DQRIYNMIDV LREGNMR

Arabidopsis Description

DAPB14-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80574]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.