CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88863
EES06418
OQU82539

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44040.1	EER88863	AT3G20310.1	21798944
AT2G44040.1	EES06418	AT3G20310.1	21798944
AT2G44040.1	OQU82539	AT3G20310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047935_P003	Maize	plasma membrane	92.33	91.49
Os03t0245100-01	Rice	mitochondrion	80.06	80.31
TraesCS4D01G226800.1	Wheat	mitochondrion	78.83	78.83
TraesCS4B01G226100.1	Wheat	mitochondrion	78.22	78.22
TraesCS4A01G069000.2	Wheat	mitochondrion	78.22	77.98
KRH06536	Soybean	cytosol	44.79	76.44
HORVU4Hr1G063600.3	Barley	mitochondrion	76.07	72.73
GSMUA_Achr4P25630_001	Banana	mitochondrion	61.35	67.57
GSMUA_Achr1P02550_001	Banana	plastid	64.42	63.44
OQU80721	Sorghum	plastid	61.66	58.6
PGSC0003DMT400073601	Potato	plastid	57.98	56.93
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	60.74	56.73
Solyc01g098380.2.1	Tomato	plastid	57.67	56.63
KRH47978	Soybean	mitochondrion	59.2	56.1
CDY23412	Canola	plastid	56.13	52.74
AT3G59890.1	Thale cress	plastid	56.13	52.44
CDY30450	Canola	plastid	54.6	52.35
CDX95582	Canola	plastid	55.83	52.3
CDX83447	Canola	plastid	55.83	52.3
AT2G44040.1	Thale cress	plastid	55.52	52.16
Bra037671.1-P	Field mustard	plastid	54.29	52.06
Bra000338.1-P	Field mustard	plastid	55.52	52.01
KRH06535	Soybean	mitochondrion, plastid	14.11	30.26

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	EntrezGene:8054352
UniProt:C5WQZ8	InterPro:DHDPR_bac	InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	EnsemblPlants:EER95181
ProteinID:EER95181	ProteinID:EER95181.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008839	GO:GO:0009058	GO:GO:0009089	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0019877	GO:GO:0055114	GO:GO:0070402	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173
PANTHER:PTHR20836	PANTHER:PTHR20836:SF3	MetaCyc:PWY-2941	MetaCyc:PWY-2942	MetaCyc:PWY-5097	EnsemblPlantsGene:SORBI_3001G438600
SUPFAM:SSF51735	unigene:Sbi.13941	TIGRFAMs:TIGR02130	UniParc:UPI0001A8323F	RefSeq:XP_002468183.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:71672108..71675955

Molecular Weight (calculated)

35642.7 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.146

Length

326 amino acids

Sequence
(BLAST)

001: MLSLRPPPTT FSRPLRWPRR GRLGGAAAAQ YVSAAAPSAA LESAAPPESV SFPILVNGCT GKMGLSVAEA AALRGLHLVP VSFSSREKVE KTIQVGQTDI
101: RIYGPSARED ILSSVADEFP DVIIVDYTAP DSVNSNAELY CKLGLPFVMG TTGGNRHLLY KSVQDSKSYA LVSPQMGKQV VAFVAAMKIM AEQFPGAFSG
201: YHLEVLESHQ AGKLDTSGTA KDVIACFEKL GVSYDMNRMV KIRDPEQQLE MVGVPEEHIQ GHAFHLYHLT SPDDSVSFEF QHNVCGRSIY AEGTIDAAIF
301: LHRKVQSKDS KRIYNMDDVL REGYMR

Best Arabidopsis Sequence Match ( AT3G59890.1 )
(BLAST)

001: MAANGLMAAS SVFLHRPVHP HFSFSSRTNQ MVPLGFKGRV SFIGNVKRCF PVVLSMGKSE TFEEAGNSVA PGNGISIMVN GCSGKMGKAV IKAADSAGVN
101: IVPTSFGSVE EAGQTVEVCG KEILVHGPTE REKVLSSVFE KYPELIVVDY TIPSAVNDNA ELYGKVGVPF VMGTTGGDRT RLYKTVEESK IYAVISPQMG
201: KQVVAFLAAM EIMSEQFPGA FAGYSLEVME SHQASKLDAS GTAKAVISCF QKLGVSYDMD QIQLIRDPKQ QIEVVGVPEE HVSGHAFHLY HLTSPDKTVS
301: FEFQHNVCGR SIYAEGTVDA VLFLAKKIRS KAEKRIYNMI DVLREGNMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.