Factsheet for GSMUA_Achr4P25630_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06536	Soybean	cytosol	50.34	78.01
GSMUA_Achr1P02550_001	Banana	plastid	75.0	67.07
Os03t0245100-01	Rice	mitochondrion	67.91	61.85
EER95181	Sorghum	mitochondrion	67.57	61.35
TraesCS4D01G226800.1	Wheat	mitochondrion	66.89	60.74
TraesCS4B01G226100.1	Wheat	mitochondrion	66.22	60.12
TraesCS4A01G069000.2	Wheat	mitochondrion	66.22	59.94
Zm00001d047935_P003	Maize	plasma membrane	65.88	59.27
Os02t0436400-01	Rice	plastid	68.58	59.18
TraesCS1D01G094400.1	Wheat	plastid	66.89	58.06
OQU80721	Sorghum	plastid	67.23	58.02
TraesCS1A01G102500.1	Wheat	plastid	66.55	57.77
VIT_05s0094g01480.t01	Wine grape	mitochondrion, plastid	67.91	57.59
Zm00001d049956_P002	Maize	plastid	66.55	57.43
Solyc01g098380.2.1	Tomato	plastid	64.19	57.23
PGSC0003DMT400073601	Potato	plastid	64.19	57.23
CDY30450	Canola	plastid	63.85	55.59
Bra037671.1-P	Field mustard	plastid	63.51	55.29
KRH47978	Soybean	mitochondrion	64.19	55.23
HORVU4Hr1G063600.3	Barley	mitochondrion	63.51	55.13
AT2G44040.1	Thale cress	plastid	64.19	54.76
CDX95582	Canola	plastid	63.85	54.31
CDX83447	Canola	plastid	63.85	54.31
Bra000338.1-P	Field mustard	plastid	63.85	54.31
CDY23412	Canola	plastid	63.51	54.18
AT3G59890.1	Thale cress	plastid	63.85	54.15
HORVU1Hr1G021120.1	Barley	mitochondrion, plastid	67.91	49.75
TraesCS1B01G113300.2	Wheat	plastid	48.65	39.67
HORVU4Hr1G073970.1	Barley	cytosol	7.43	27.85
KRH06535	Soybean	mitochondrion, plastid	13.51	26.32

Protein Annotations

KEGG:00261+1.17.1.8	KEGG:00300+1.17.1.8	Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.3.2	InterPro:DHDPR_bac
InterPro:DapB_C	InterPro:DapB_N	InterPro:Dihydrodipicolinate_Rdtase_pln	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008839	GO:GO:0009058	GO:GO:0009089
GO:GO:0009987	GO:GO:0055114	GO:GO:0070402	EnsemblPlantsGene:GSMUA_Achr4G25630_001	EnsemblPlants:GSMUA_Achr4P25630_001	EnsemblPlants:GSMUA_Achr4T25630_001
UniProt:M0SS24	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01113	PFAM:PF05173	PANTHER:PTHR20836	PANTHER:PTHR20836:SF3
SUPFAM:SSF51735	TIGRFAMs:TIGR02130	UniParc:UPI000294ABDB	SEG:seg	:	:

Description

Probable dihydrodipicolinate reductase 1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr4G25630_001]

Coordinates

chr4:+:25090472..25094694

Molecular Weight (calculated)

32435.3 Da

IEP (calculated)

7.252

GRAVY (calculated)

-0.003

Length

296 amino acids

Sequence
(BLAST)

001: MFSLRPQITA LSLALPGHRR PLLARRSPQR PSSVVSVLTS ESPNMAPAFA PPNLSFPVLV NGCTGKMGRA VAEAAISAGL QESVLSSVFH EFPDVIVVDY
101: TVPDAVNVNA DLYRKLGIPF LMGTTGGDRQ MLYKTVQDAN VYAVISPQMG KQVVAFLATM DIMADQFPGA FSGYTLEVME SHQASKLDTS GTAKAVISCF
201: QKLGVTFDMK QIRDPKKQLE MVGVPEEHLS GHAFHMYHLT SPDETVSFEF QHNVCGRAIY AEGTIDAAIF LFKKVQSKAD KRIYDMIDVL REGNMR

Best Arabidopsis Sequence Match ( AT3G59890.1 )
(BLAST)

001: MAANGLMAAS SVFLHRPVHP HFSFSSRTNQ MVPLGFKGRV SFIGNVKRCF PVVLSMGKSE TFEEAGNSVA PGNGISIMVN GCSGKMGKAV IKAADSAGVN
101: IVPTSFGSVE EAGQTVEVCG KEILVHGPTE REKVLSSVFE KYPELIVVDY TIPSAVNDNA ELYGKVGVPF VMGTTGGDRT RLYKTVEESK IYAVISPQMG
201: KQVVAFLAAM EIMSEQFPGA FAGYSLEVME SHQASKLDAS GTAKAVISCF QKLGVSYDMD QIQLIRDPKQ QIEVVGVPEE HVSGHAFHLY HLTSPDKTVS
301: FEFQHNVCGR SIYAEGTVDA VLFLAKKIRS KAEKRIYNMI DVLREGNMR

Arabidopsis Description

DAPB24-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LB01]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.