Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G097500.1 | Wheat | nucleus | 90.85 | 70.88 |
| TraesCS6D01G084200.1 | Wheat | nucleus | 86.62 | 64.91 |
| TraesCS6B01G126600.1 | Wheat | nucleus | 80.99 | 62.84 |
| HORVU6Hr1G076090.2 | Barley | nucleus | 57.39 | 50.94 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 40.14 | 48.31 |
| EES07642 | Sorghum | nucleus | 54.23 | 41.85 |
| Zm00001d052087_P001 | Maize | nucleus | 53.17 | 41.83 |
| KRG97290 | Soybean | nucleus | 34.86 | 33.11 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 42.25 | 31.66 |
| Zm00001d018305_P001 | Maize | nucleus | 30.99 | 31.21 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 33.45 | 28.79 |
| KRH69017 | Soybean | nucleus | 34.51 | 28.41 |
| Solyc06g063070.2.1 | Tomato | nucleus | 36.97 | 28.23 |
| PGSC0003DMT400012547 | Potato | nucleus | 36.97 | 28.23 |
| Solyc03g123500.2.1 | Tomato | nucleus | 36.27 | 26.68 |
| Solyc12g049560.1.1 | Tomato | nucleus | 36.27 | 26.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.86 | 26.47 |
| KRH06265 | Soybean | nucleus | 34.86 | 25.92 |
| PGSC0003DMT400074248 | Potato | nucleus | 35.21 | 25.77 |
| PGSC0003DMT400023609 | Potato | nucleus | 35.21 | 25.64 |
| KRH47694 | Soybean | nucleus | 35.21 | 25.51 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF44 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCSU01G183700 | EnsemblPlants:TraesCSU01G183700.1 | TIGR:cd00018 | : | : |
Description
No Description!
Coordinates
chrUn:+:277361330..277362315
Molecular Weight (calculated)
31398.8 Da
IEP (calculated)
4.676
GRAVY (calculated)
-0.426
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTAGFDGPS AKRKRKSQFR GIRQRPWGKW AAEIRDPSKG ARVWLGTFNS AEEAARAYDV EARRIRGNKA KVNFPKEPIV PQKRRARPGA PKAPKLSVAS
101: EPSVMPSVNN LSNPNAFIYP SANFASNQPL ALPDNLSFFP IMNSDGPVEA SVMNQYSDQG INSFSFSDLE WDYNTKNLDI PSIAPISTIT EGAEYALAQS
201: NAYNSVVIPE GAESALAQSN TYNLVVPHVM ENNGVDFNAW PRFLMDDEVD EPIDSLLNFD VPQDVVVNMD LWSFDGMPMC GEFL
101: EPSVMPSVNN LSNPNAFIYP SANFASNQPL ALPDNLSFFP IMNSDGPVEA SVMNQYSDQG INSFSFSDLE WDYNTKNLDI PSIAPISTIT EGAEYALAQS
201: NAYNSVVIPE GAESALAQSN TYNLVVPHVM ENNGVDFNAW PRFLMDDEVD EPIDSLLNFD VPQDVVVNMD LWSFDGMPMC GEFL
001: MSQSFELYPW LGSASDGKKK QSSRYKGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEEA ARAYDLEAKR IRGAKAKLNF PNESSGKRKA KAKTVQQVEE
101: NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL
201: FDGGNDMGLW S
101: NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL
201: FDGGNDMGLW S
Arabidopsis Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.