Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P10140_001 | Banana | nucleus | 62.1 | 66.96 |
| GSMUA_Achr3P05800_001 | Banana | nucleus | 60.48 | 54.74 |
| GSMUA_Achr2P21900_001 | Banana | nucleus | 29.84 | 48.05 |
| GSMUA_Achr6P10870_001 | Banana | nucleus | 43.15 | 45.15 |
| GSMUA_Achr8P23730_001 | Banana | nucleus | 57.26 | 43.56 |
| GSMUA_Achr10P... | Banana | nucleus | 47.58 | 41.12 |
| GSMUA_Achr3P08170_001 | Banana | nucleus | 29.03 | 39.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.87 | 38.89 |
| GSMUA_Achr11P... | Banana | nucleus | 31.05 | 38.69 |
| GSMUA_Achr5P24060_001 | Banana | nucleus | 58.87 | 38.02 |
| GSMUA_Achr10P... | Banana | nucleus | 41.13 | 37.92 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 49.19 | 36.97 |
| GSMUA_Achr7P18930_001 | Banana | nucleus | 20.56 | 36.69 |
| GSMUA_Achr7P19800_001 | Banana | nucleus | 50.4 | 34.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.26 | 34.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.55 | 28.88 |
| GSMUA_Achr3P08180_001 | Banana | nucleus | 21.37 | 26.9 |
| GSMUA_Achr6P02310_001 | Banana | nucleus | 20.16 | 25.25 |
| GSMUA_Achr6P25680_001 | Banana | nucleus | 22.98 | 24.68 |
| GSMUA_Achr3P06960_001 | Banana | nucleus | 21.77 | 22.98 |
| GSMUA_Achr10P... | Banana | nucleus | 20.97 | 22.91 |
| GSMUA_Achr8P22500_001 | Banana | nucleus | 22.58 | 22.76 |
| GSMUA_Achr6P18020_001 | Banana | nucleus | 23.79 | 22.26 |
| GSMUA_Achr11P... | Banana | nucleus | 22.18 | 21.48 |
| GSMUA_Achr6P08140_001 | Banana | nucleus | 21.77 | 19.42 |
| GSMUA_Achr10P... | Banana | nucleus | 22.98 | 19.39 |
| GSMUA_Achr2P21430_001 | Banana | nucleus, plastid | 21.37 | 18.21 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G18090_001 | EnsemblPlants:GSMUA_Achr9P18090_001 | EnsemblPlants:GSMUA_Achr9T18090_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0U1B6 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31190 | PANTHER:PTHR31190:SF44 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000294BF7E | SEG:seg |
Description
AP2 domain class transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr9G18090_001]
Coordinates
chr9:+:12657380..12659857
Molecular Weight (calculated)
27922.6 Da
IEP (calculated)
4.770
GRAVY (calculated)
-0.716
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIVSDF IPTARSRRVT DADLLWPNLK KGGSKKKRGS RRCAVEETED DFEADFQEFD NESGESEEND EAELVDVQFS AFPPKDGEMT FKPVGFDGPA
101: MRCAKRKRKN QYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA YDAEARRIRG KKAKVNFPDE APIPQKCLKL KNNAGEAVPT EENDAVELSE
201: EFSTFDSFMK FLHIPSLEAS TDDSIDSFLN YDVIQEESVM SIACSVAM
101: MRCAKRKRKN QYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA YDAEARRIRG KKAKVNFPDE APIPQKCLKL KNNAGEAVPT EENDAVELSE
201: EFSTFDSFMK FLHIPSLEAS TDDSIDSFLN YDVIQEESVM SIACSVAM
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.