Factsheet for GSMUA_Achr3P10140_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18090_001	Banana	nucleus	66.96	62.1
GSMUA_Achr3P05800_001	Banana	nucleus	57.83	48.54
GSMUA_Achr2P21900_001	Banana	nucleus	32.17	48.05
GSMUA_Achr6P10870_001	Banana	nucleus	43.48	42.19
GSMUA_Achr8P23730_001	Banana	nucleus	58.7	41.41
GSMUA_Achr3P08170_001	Banana	nucleus	30.0	37.5
GSMUA_AchrUn_...	Banana	nucleus	33.91	36.11
GSMUA_Achr10P...	Banana	nucleus	42.17	36.06
GSMUA_Achr11P...	Banana	nucleus	30.87	35.68
GSMUA_Achr7P18930_001	Banana	nucleus	21.3	35.25
GSMUA_Achr10P...	Banana	nucleus	43.04	34.49
GSMUA_Achr5P24060_001	Banana	nucleus	56.52	33.85
GSMUA_Achr2P07300_001	Banana	nucleus	48.26	33.64
GSMUA_AchrUn_...	Banana	nucleus	33.48	32.91
GSMUA_Achr7P19800_001	Banana	nucleus	48.7	30.85
GSMUA_AchrUn_...	Banana	nucleus	46.09	28.34
GSMUA_Achr3P08180_001	Banana	nucleus	22.17	25.89
GSMUA_Achr6P02310_001	Banana	nucleus	20.87	24.24
GSMUA_Achr3P06960_001	Banana	nucleus	23.48	22.98
GSMUA_Achr8P22500_001	Banana	nucleus	24.35	22.76
GSMUA_Achr6P25680_001	Banana	nucleus	22.17	22.08
GSMUA_Achr10P...	Banana	nucleus	21.3	21.59
GSMUA_Achr6P18020_001	Banana	nucleus	23.48	20.38
GSMUA_Achr11P...	Banana	nucleus	22.61	20.31
GSMUA_Achr6P08140_001	Banana	nucleus	22.61	18.7
GSMUA_Achr2P21430_001	Banana	nucleus, plastid	23.04	18.21
GSMUA_Achr10P...	Banana	nucleus	21.3	16.67

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G10140_001	EnsemblPlants:GSMUA_Achr3P10140_001	EnsemblPlants:GSMUA_Achr3T10140_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SDD1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF44	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002969200	SEG:seg

Description

Ethylene-responsive transcription factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G10140_001]

Coordinates

chr3:+:7355429..7358012

Molecular Weight (calculated)

26045.5 Da

IEP (calculated)

9.098

GRAVY (calculated)

-0.847

Length

230 amino acids

Sequence
(BLAST)

001: MCGGAIISDF IPAARSRLVT DADLLWPNPK KAKSTKKKGS RRRLAQETED DFEADFREFN DESGESEEDD VVEIVDVKLP AFAPKDGQIA LGPVEFDGPA
101: ARSAKRKRKN QFRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA YDAEARRIRG KKAKVNFPEE APTGLQKHLT KLTAPKAPTS DRPQESLNFN
201: QSFGCLNDID HDIYSTFDLS TYRRTWDDVF

Best Arabidopsis Sequence Match ( AT3G14230.3 )
(BLAST)

001: MCGGAIISDF IPPPRSLRVT NEFIWPDLKN KVKASKKRSN KRSDFFDLDD DFEADFQGFK DDSAFDCEDD DDVFVNVKPF VFTATTKPVA SAFVSTGSAY
101: AKKTVESAEQ AEKSSKRKRK NQYRGIRQRP WGKWAAEIRD PRKGSREWLG TFDTAEEAAR AYDAAARRIR GTKAKVNFPE EKNPSVVSQK RPSAKTNNLQ
201: KSVAKPNKSV TLVQQPTHLS QQYCNNSFDN SFGDMSFMEE KPQMYNNQFG LTNSFDAGGN NGYQYFSSDQ GSNSFDCSEF GWSDHGPKTP EISSMLVNNN
301: EASFVEETNA AKKLKPNSDE SDDLMAYLDN ALWDTPLEVE AMLGADAGAV TQEEENPVEL WSLDEINFML EGDF

Arabidopsis Description

RAP2-2Ethylene-responsive transcription factor RAP2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.