Factsheet for GSMUA_Achr3P05800_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18090_001	Banana	nucleus	54.74	60.48
GSMUA_Achr3P10140_001	Banana	nucleus	48.54	57.83
GSMUA_Achr8P23730_001	Banana	nucleus	68.61	57.67
GSMUA_Achr6P10870_001	Banana	nucleus	45.62	52.74
GSMUA_Achr2P21900_001	Banana	nucleus	27.74	49.35
GSMUA_Achr10P...	Banana	nucleus	43.43	44.24
GSMUA_Achr3P08170_001	Banana	nucleus	28.83	42.93
GSMUA_Achr2P07300_001	Banana	nucleus	50.37	41.82
GSMUA_Achr11P...	Banana	nucleus	29.93	41.21
GSMUA_AchrUn_...	Banana	nucleus	32.48	41.2
KRH69017	Soybean	nucleus	51.46	40.87
GSMUA_Achr10P...	Banana	nucleus	42.34	40.42
GSMUA_Achr5P24060_001	Banana	nucleus	56.57	40.36
GSMUA_Achr7P19800_001	Banana	nucleus	49.63	37.47
Solyc06g063070.2.1	Tomato	nucleus	50.37	37.1
PGSC0003DMT400012547	Potato	nucleus	50.0	36.83
GSMUA_Achr7P18930_001	Banana	nucleus	18.25	35.97
Solyc03g123500.2.1	Tomato	nucleus	50.37	35.75
PGSC0003DMT400023609	Potato	nucleus	50.37	35.38
GSMUA_AchrUn_...	Banana	nucleus	29.56	34.62
GSMUA_AchrUn_...	Banana	nucleus	45.99	33.69
GSMUA_Achr3P08180_001	Banana	nucleus	19.71	27.41
GSMUA_Achr6P02310_001	Banana	nucleus	17.52	24.24
GSMUA_Achr3P06960_001	Banana	nucleus	20.07	23.4
GSMUA_Achr6P25680_001	Banana	nucleus	19.71	23.38
GSMUA_Achr8P22500_001	Banana	nucleus	20.44	22.76
GSMUA_Achr10P...	Banana	nucleus	18.25	22.03
GSMUA_Achr6P18020_001	Banana	nucleus	20.07	20.75
GSMUA_Achr11P...	Banana	nucleus	19.34	20.7
GSMUA_Achr6P08140_001	Banana	nucleus	18.25	17.99
GSMUA_Achr2P21430_001	Banana	nucleus, plastid	18.61	17.53
GSMUA_Achr10P...	Banana	nucleus	18.25	17.01

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G05800_001	EnsemblPlants:GSMUA_Achr3P05800_001	EnsemblPlants:GSMUA_Achr3T05800_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SC48	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF44	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002959B91	SEG:seg

Description

Putative Ethylene-responsive transcription factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G05800_001]

Coordinates

chr3:+:3893201..3901326

Molecular Weight (calculated)

30673.8 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.647

Length

274 amino acids

Sequence
(BLAST)

001: MVSALMCGGA IISDFIPTVR PERRVTADYL WRGLKRGGAN GVKTKKSNGH RRAVKDTEDD FEADFQEFEY ESMVSEVEDE VEHVDTPFAL ASTVTLKPVE
101: FNGPAARSAK KKRKNQYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDAEA RKIRGKKAKV NFPDEAPTSI KQSPAIEEPA INFYSDRGSN
201: SFDCSKYGHE DSSAKLSEEL SAFESYMKFL QVPYLEGGSD EPIESLLIND VTQDVNGVDL WSFDDLPPVA VSGY

Best Arabidopsis Sequence Match ( AT1G53910.3 )
(BLAST)

001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF

Arabidopsis Description

RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.