Factsheet for Bra001378.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73905	Canola	nucleus	96.94	95.0
Bra001377.1-P	Field mustard	nucleus	65.31	47.41
Bra004593.1-P	Field mustard	nucleus	43.88	17.41
Bra009087.1-P	Field mustard	nucleus	46.94	17.23
Bra005837.1-P	Field mustard	nucleus	43.88	17.13
Bra029866.1-P	Field mustard	nucleus	46.94	16.08
Bra034144.1-P	Field mustard	nucleus	47.96	14.46
Bra033809.1-P	Field mustard	nucleus	41.84	14.39
Bra018204.1-P	Field mustard	nucleus	42.86	13.82
Bra037427.1-P	Field mustard	nucleus	35.71	12.82
Bra026635.1-P	Field mustard	nucleus	44.9	11.67
Bra020652.1-P	Field mustard	nucleus	39.8	8.84
Bra041027.1-P	Field mustard	nucleus	34.69	8.1
Bra004245.1-P	Field mustard	nucleus	41.84	8.01
Bra004076.1-P	Field mustard	nucleus	40.82	7.86
Bra023972.1-P	Field mustard	nucleus	39.8	7.53
Bra012743.1-P	Field mustard	nucleus	43.88	7.26
Bra032275.1-P	Field mustard	nucleus	35.71	6.93
Bra020390.1-P	Field mustard	nucleus	43.88	6.9
Bra014172.1-P	Field mustard	nucleus	30.61	6.68
Bra033527.1-P	Field mustard	nucleus	42.86	6.64
Bra001643.1-P	Field mustard	nucleus	42.86	6.46
Bra032035.1-P	Field mustard	nucleus	37.76	6.37
Solyc01g091810.1.1	Tomato	nucleus	36.73	6.23
PGSC0003DMT400089008	Potato	nucleus	36.73	6.17
Bra022183.1-P	Field mustard	nucleus	42.86	6.17
Bra001641.1-P	Field mustard	cytosol	8.16	5.41
Bra028705.1-P	Field mustard	nucleus	40.82	5.22
Bra009284.1-P	Field mustard	nucleus	38.78	4.92
Bra005928.1-P	Field mustard	nucleus	33.67	4.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	EnsemblPlantsGene:Bra001378	EnsemblPlants:Bra001378.1	EnsemblPlants:Bra001378.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CAZ9	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF1	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025406A3	:	:	:

Description

AT3G10760 (E=1e-019) | myb family transcription factor

Coordinates

chrA03:+:16079737..16080033

Molecular Weight (calculated)

11359.5 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.426

Length

98 amino acids

Sequence
(BLAST)

1: MREDDSNWFA GWEKELPSQL QLPSSQANSR VVWSQQLHER FLDAVEHFGI NHAVPKSIME FMDVDGLTRV EVASHLQKYR LYLQKMHHLM HAGVGSIS

Best Arabidopsis Sequence Match ( AT3G10760.1 )
(BLAST)

001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.