Factsheet for Bra004593.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79963	Canola	nucleus	99.6	99.6
AT2G40970.1	Thale cress	nucleus	83.0	82.66
Bra005837.1-P	Field mustard	nucleus	50.61	49.8
Bra009087.1-P	Field mustard	nucleus	53.44	49.44
KRH71692	Soybean	nucleus	51.82	49.23
VIT_08s0040g00900.t01	Wine grape	nucleus	60.32	48.69
Bra029866.1-P	Field mustard	nucleus	55.47	47.9
KRG95053	Soybean	nucleus	59.11	46.79
Bra034144.1-P	Field mustard	nucleus	59.92	45.54
GSMUA_Achr11P...	Banana	nucleus	54.25	44.22
GSMUA_Achr8P05880_001	Banana	nucleus	56.28	44.13
Bra001378.1-P	Field mustard	nucleus	17.41	43.88
GSMUA_Achr5P27500_001	Banana	nucleus	47.77	41.55
Zm00001d010280_P001	Maize	nucleus	49.8	41.14
TraesCS1D01G257700.1	Wheat	nucleus	50.2	40.13
TraesCS1B01G268900.1	Wheat	nucleus	49.8	39.94
Zm00001d038191_P001	Maize	nucleus	50.2	39.74
TraesCS1A01G258400.1	Wheat	nucleus	49.8	39.42
HORVU1Hr1G064950.1	Barley	nucleus	48.58	39.34
Bra001377.1-P	Field mustard	nucleus	19.43	35.56
Bra018204.1-P	Field mustard	nucleus	39.68	32.24
Bra033809.1-P	Field mustard	nucleus	36.84	31.93
Os05t0412000-00	Rice	nucleus	50.61	30.27
Bra026635.1-P	Field mustard	nucleus	21.86	14.32
Bra037427.1-P	Field mustard	nucleus	15.79	14.29
Bra020652.1-P	Field mustard	nucleus	19.43	10.88
Bra041027.1-P	Field mustard	nucleus	18.22	10.71
Bra004076.1-P	Field mustard	nucleus	21.05	10.22
Bra004245.1-P	Field mustard	nucleus	21.05	10.16
Bra032035.1-P	Field mustard	nucleus	23.89	10.15
Bra023972.1-P	Field mustard	nucleus	20.24	9.65
Bra012743.1-P	Field mustard	nucleus	23.08	9.63
Bra001643.1-P	Field mustard	nucleus	24.29	9.23
Bra020390.1-P	Field mustard	nucleus	23.08	9.15
Bra033527.1-P	Field mustard	nucleus	22.67	8.85
Bra022183.1-P	Field mustard	nucleus	23.48	8.52
Bra014172.1-P	Field mustard	nucleus	15.38	8.46
Bra032275.1-P	Field mustard	nucleus	17.0	8.32
Bra009284.1-P	Field mustard	nucleus	19.43	6.21
Bra005928.1-P	Field mustard	nucleus	18.62	6.06
Bra028705.1-P	Field mustard	nucleus	18.22	5.87
Bra001641.1-P	Field mustard	cytosol	2.83	4.73

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	EnsemblPlantsGene:Bra004593	EnsemblPlants:Bra004593.1	EnsemblPlants:Bra004593.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009628	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M4CK59	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR31442	PANTHER:PTHR31442:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002547596
SEG:seg	:	:	:	:	:

Description

AT2G40970 (E=3e-091) | myb family transcription factor

Coordinates

chrA05:-:948574..949317

Molecular Weight (calculated)

27140.5 Da

IEP (calculated)

9.762

GRAVY (calculated)

-0.461

Length

247 amino acids

Sequence
(BLAST)

001: MREETPNWLV RWEEELPSPE ELIPISQTLI TPHLALAFQI GSHNNHSSPK RTVAMYHQKL QPAATPTPTM MNSDFAVDSS TDLGSGGGGG GGEEPARTLK
101: RPRLVWTPQL HKRFVDAVGH LGIKNAVPKT IMQLMSVEGL TRENVASHLQ KYRLYLRRMQ GGNGNGVSGG HVIVSDSATD RLFASSPVPA HLLSHEYLMP
201: SPLMNPYLGK HVVTQQNHVV RNLRYEGSEY GNGDGGRKVL KLFPAGN

Best Arabidopsis Sequence Match ( AT2G40970.1 )
(BLAST)

001: MREDNPNWFL RWEEELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK RTTAIYHQKL QSSTTPTTPT PTPPPMMMNS DFGGGDSTDL GSGSIGGEPA
101: RTLKRPRLVW TPQLHKRFVD AVGHLGIKNA VPKTIMQLMS VEGLTRENVA SHLQKYRLYL RRMQGGNGNG ITGGHVIVSD SATDRLFASS PVPAHFLSPD
201: YLMPPLEHSY MGKHVITQQN QVVRNLRYED SEYGHGSMKM LKLFPAGN

Arabidopsis Description

MYBC1MYBC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VYV1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.