Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00969 | Canola | nucleus | 76.72 | 90.49 |
| Bra034144.1-P | Field mustard | nucleus | 87.16 | 89.85 |
| Bra029866.1-P | Field mustard | nucleus | 75.52 | 88.46 |
| AT5G05090.1 | Thale cress | nucleus | 52.84 | 66.54 |
| CDY08579 | Canola | nucleus | 45.97 | 63.64 |
| AT2G40970.1 | Thale cress | nucleus | 45.37 | 61.29 |
| GSMUA_Achr11P... | Banana | nucleus | 48.36 | 53.47 |
| GSMUA_Achr8P05880_001 | Banana | nucleus | 49.85 | 53.02 |
| GSMUA_Achr5P27500_001 | Banana | nucleus | 44.78 | 52.82 |
| HORVU1Hr1G064950.1 | Barley | nucleus | 44.18 | 48.52 |
| TraesCS1D01G257700.1 | Wheat | nucleus | 44.48 | 48.22 |
| TraesCS1B01G268900.1 | Wheat | nucleus | 44.18 | 48.05 |
| Zm00001d010280_P001 | Maize | nucleus | 42.39 | 47.49 |
| TraesCS1A01G258400.1 | Wheat | nucleus | 44.18 | 47.44 |
| Zm00001d038191_P001 | Maize | nucleus | 42.99 | 46.15 |
| Os05t0412000-00 | Rice | nucleus | 45.07 | 36.56 |
| AT5G59570.2 | Thale cress | nucleus | 29.25 | 32.89 |
| AT3G46640.3 | Thale cress | nucleus | 30.15 | 31.17 |
| AT2G01760.2 | Thale cress | nucleus | 17.31 | 14.15 |
| AT5G49240.1 | Thale cress | cytoskeleton, cytosol, nucleus | 11.64 | 13.36 |
| AT4G31920.1 | Thale cress | nucleus | 18.81 | 11.41 |
| AT2G25180.1 | Thale cress | nucleus | 20.3 | 11.41 |
| AT1G67710.1 | Thale cress | nucleus | 15.82 | 10.17 |
| AT3G16857.2 | Thale cress | nucleus | 20.9 | 10.14 |
| AT5G58080.1 | Thale cress | nucleus | 19.1 | 10.08 |
| AT3G62670.1 | Thale cress | nucleus | 12.24 | 9.62 |
| AT2G27070.1 | Thale cress | nucleus | 14.33 | 8.39 |
| AT5G07210.1 | Thale cress | nucleus | 15.52 | 8.37 |
| AT1G49190.2 | Thale cress | nucleus | 10.75 | 5.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | EntrezGene:820245 | UniProt:A0A178VNS4 | ProteinID:AAF19573.1 | ProteinID:AEE74951.1 |
| ArrayExpress:AT3G10760 | EnsemblPlantsGene:AT3G10760 | RefSeq:AT3G10760 | TAIR:AT3G10760 | RefSeq:AT3G10760-TAIR-G | EnsemblPlants:AT3G10760.1 |
| TAIR:AT3G10760.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | RefSeq:NP_187687.1 | ProteinID:OAP06502.1 | PFAM:PF00249 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF1 | UniProt:Q9SG82 | InterPro:SANT/Myb | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI00000A69DE | SEG:seg | : | : | : |
Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
Coordinates
chr3:+:3369479..3371575
Molecular Weight (calculated)
36116.0 Da
IEP (calculated)
7.012
GRAVY (calculated)
-0.566
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.