Factsheet for PGSC0003DMT400018485

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078310.1.1	Tomato	nucleus	99.31	99.31
PGSC0003DMT400072213	Potato	nucleus	73.45	80.08
CDX98816	Canola	nucleus	57.93	64.37
Bra009087.1-P	Field mustard	nucleus	58.97	64.04
AT5G05090.1	Thale cress	nucleus	57.93	63.16
GSMUA_Achr11P...	Banana	nucleus	57.59	55.12
GSMUA_Achr8P05880_001	Banana	nucleus	57.24	52.7
GSMUA_Achr5P27500_001	Banana	nucleus	48.28	49.3
HORVU1Hr1G064950.1	Barley	nucleus	51.38	48.85
TraesCS1B01G268900.1	Wheat	nucleus	51.03	48.05
TraesCS1D01G257700.1	Wheat	nucleus	51.03	47.9
Zm00001d010280_P001	Maize	nucleus	49.31	47.83
TraesCS1A01G258400.1	Wheat	nucleus	51.03	47.44
Zm00001d038191_P001	Maize	nucleus	50.34	46.79
Os05t0412000-00	Rice	nucleus	51.03	35.84
PGSC0003DMT400005490	Potato	nucleus	36.55	35.1
PGSC0003DMT400077979	Potato	nucleus	32.41	29.94
PGSC0003DMT400060506	Potato	nucleus	26.55	11.61
PGSC0003DMT400065835	Potato	nucleus	26.55	11.41
PGSC0003DMT400035788	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	7.93	10.6
PGSC0003DMT400075907	Potato	nucleus	23.1	10.26
PGSC0003DMT400020233	Potato	nucleus	24.48	10.04
PGSC0003DMT400031260	Potato	nucleus	20.0	10.0
PGSC0003DMT400090747	Potato	nucleus	18.62	9.66
PGSC0003DMT400008290	Potato	nucleus	24.83	9.31
PGSC0003DMT400089008	Potato	nucleus	17.93	8.92

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102580374	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1AAQ4	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400007174	PGSC:PGSC0003DMG400007174	EnsemblPlants:PGSC0003DMT400018485	PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF1
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002956F2A	RefSeq:XP_006364782.1	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007174]

Coordinates

chr10:+:59428977..59430787

Molecular Weight (calculated)

31902.5 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.610

Length

290 amino acids

Sequence
(BLAST)

001: MREEDSNWFA KWEEELPKPE ELMSLSQTLI TPDLAIAFDI PNPTSPNPQS KQQQTPHVQS SQPNSSAEFE STELNGGGGG DEPARTLKRP RLVWTPQLHK
101: RFVDAVAHLG IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SNSGSGGSNA QSLSGAGVDP AMDNLFASSP VPAHFLHPGR GNSDHFMPFV
201: PVTPMQHHHH MGVVVGHHPQ VQQQYRQFGS PANGHFEHPF LSRQSQQQVQ RMGTSVHNGS PVVSSYVEDV DSATAVNGRK VLTLFPTGED

Best Arabidopsis Sequence Match ( AT3G10760.1 )
(BLAST)

001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.