Factsheet for GSMUA_Achr5P16510_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	49.54	40.23
Bra001641.1-P	Field mustard	cytosol	22.69	33.11
CDY54632	Canola	cytosol	22.22	32.43
CDX82391	Canola	cytosol	21.76	31.76
CDY54630	Canola	cytosol	21.76	30.32
CDY52720	Canola	nucleus	23.61	27.27
GSMUA_Achr5P13050_001	Banana	cytosol	27.31	25.76
GSMUA_Achr3P14630_001	Banana	cytosol	35.65	21.1
CDX75892	Canola	nucleus	33.8	16.15
GSMUA_Achr10P...	Banana	nucleus	32.41	16.13
CDX95898	Canola	nucleus	36.11	15.45
CDX92102	Canola	nucleus	35.19	15.14
GSMUA_Achr3P13400_001	Banana	nucleus	43.98	15.13
GSMUA_Achr11P...	Banana	nucleus	43.98	15.03
GSMUA_Achr10P...	Banana	nucleus	43.98	14.55
GSMUA_Achr8P32070_001	Banana	nucleus	36.57	14.5
GSMUA_Achr2P05130_001	Banana	nucleus	43.06	14.44
VIT_05s0077g01480.t01	Wine grape	nucleus	40.28	13.51
CDX90546	Canola	nucleus	34.72	12.71
Solyc05g054390.2.1	Tomato	nucleus	38.89	12.67
PGSC0003DMT400060506	Potato	nucleus	38.89	12.67
Bra012743.1-P	Field mustard	nucleus	34.72	12.67
KRH12005	Soybean	nucleus	39.35	12.65
CDY09718	Canola	nucleus	35.19	12.65
KRH50777	Soybean	nucleus	39.35	12.52
KRH37035	Soybean	nucleus	38.89	12.48
Bra033527.1-P	Field mustard	nucleus	36.57	12.48
Solyc01g065540.2.1	Tomato	nucleus	38.89	12.41
KRH02311	Soybean	nucleus	38.89	12.41
CDX82389	Canola	nucleus	34.72	12.32
PGSC0003DMT400065835	Potato	nucleus	38.43	12.3
GSMUA_Achr11P...	Banana	nucleus	37.5	12.29
Bra001643.1-P	Field mustard	nucleus	36.11	12.0
Bra022183.1-P	Field mustard	nucleus	36.11	11.45
AT3G16857.2	Thale cress	nucleus	36.11	11.3
GSMUA_Achr5P07060_001	Banana	nucleus	11.57	10.92
GSMUA_Achr9P16610_001	Banana	nucleus	36.11	10.79
GSMUA_Achr8P30850_001	Banana	nucleus	35.65	10.69
GSMUA_Achr1P22230_001	Banana	nucleus	35.19	10.51
GSMUA_Achr10P...	Banana	nucleus	12.5	9.68
GSMUA_AchrUn_...	Banana	nucleus	12.5	8.85
GSMUA_Achr8P05880_001	Banana	nucleus	9.72	6.67
GSMUA_Achr10P...	Banana	nucleus	7.41	6.67
GSMUA_Achr11P...	Banana	nucleus	9.26	6.6
CDY32209	Canola	nucleus	14.35	6.57
CDY34423	Canola	nucleus	14.35	6.53
GSMUA_Achr2P01920_001	Banana	nucleus, plastid	7.87	5.86
GSMUA_Achr5P27500_001	Banana	nucleus	7.41	5.63

Protein Annotations

EnsemblPlants:GSMUA_Achr5P16510_001	EnsemblPlants:GSMUA_Achr5T16510_001	EnsemblPlantsGene:GSMUA_Achr5G16510_001	Gene3D:1.10.10.60	Gene3D:3.40.50.2300	GO:GO:0000160
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:CheY-like_superfamily	InterPro:IPR001789	InterPro:Sig_transdc_resp-reg_receiver	PANTHER:PTHR43874	PANTHER:PTHR43874:SF15
PFscan:PS50110	SUPFAM:SSF52172	UniParc:UPI000294E635	UniProt:M0SZ30	MapMan:35.1	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G16510_001]

Coordinates

chr5:-:15014163..15023134

Molecular Weight (calculated)

25079.1 Da

IEP (calculated)

8.302

GRAVY (calculated)

-0.554

Length

216 amino acids

Sequence
(BLAST)

001: MNSWSVAVEA GKEGLMGREG GQTDEFPVGM RVLAVDDDLT CLKVLEALLL RCRYHVRESS MDVVVMRMKL HRWFQDSGNC EPGVGPVRLL LSVNSEIKTV
101: MKGITHGACD YLLKPVRIEE LRNIWQHVFR RKKLHHRDYS KFDNWEESHR HQNELSNHSR AVWSIDRHQK FVAADNQLGI DKAVPQEDTR AHQCREAYKR
201: KCCESFTGML LNYLQS

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.