Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71948 | Canola | cytosol | 12.57 | 72.41 |
| AT3G29350.1 | Thale cress | cytosol | 59.28 | 63.46 |
| AT5G39340.2 | Thale cress | extracellular, plasma membrane | 54.49 | 44.61 |
| VIT_07s0104g00880.t01 | Wine grape | cytosol, nucleus, plastid | 39.52 | 43.71 |
| AT1G03430.2 | Thale cress | cytosol | 38.32 | 40.76 |
| KRG95451 | Soybean | cytosol | 31.14 | 39.69 |
| PGSC0003DMT400051833 | Potato | cytosol | 35.93 | 39.47 |
| GSMUA_Achr11P... | Banana | cytosol | 34.73 | 38.41 |
| KRH31957 | Soybean | cytosol | 34.73 | 38.16 |
| KRH71497 | Soybean | cytosol, mitochondrion, nucleus | 33.53 | 36.84 |
| GSMUA_Achr7P14570_001 | Banana | cytosol | 31.74 | 34.87 |
| AT3G16360.2 | Thale cress | nucleus | 29.34 | 33.79 |
| KRH67127 | Soybean | cytosol | 17.37 | 32.95 |
| AT3G21510.1 | Thale cress | cytosol, nucleus, plastid | 29.94 | 32.47 |
| GSMUA_Achr7P14620_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 29.34 | 32.24 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.34 | 32.24 |
| Solyc06g084410.2.1 | Tomato | cytosol | 22.75 | 31.67 |
| AT1G80100.3 | Thale cress | cytosol, extracellular, nucleus | 21.56 | 22.5 |
Protein Annotations
| Gene3D:1.20.120.160 | MapMan:11.4.2.2 | EntrezGene:825765 | ProteinID:AEE82386.1 | ArrayExpress:AT4G04402 | EnsemblPlantsGene:AT4G04402 |
| RefSeq:AT4G04402 | TAIR:AT4G04402 | RefSeq:AT4G04402-TAIR-G | EnsemblPlants:AT4G04402.1 | TAIR:AT4G04402.1 | Unigene:At.54136 |
| UniProt:F4JGC7 | GO:GO:0000160 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004871 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0006468 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009719 | GO:GO:0009736 | GO:GO:0009927 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0043424 | InterPro:HPT_dom_sf | InterPro:IPR036641 | RefSeq:NP_680589.1 |
| PANTHER:PTHR28242 | PANTHER:PTHR28242:SF13 | SUPFAM:SSF47226 | UniParc:UPI00001629A1 | : | : |
Description
Two-component phosphorelay mediator [Source:UniProtKB/TrEMBL;Acc:F4JGC7]
Coordinates
chr4:+:2164007..2165404
Molecular Weight (calculated)
18832.1 Da
IEP (calculated)
8.971
GRAVY (calculated)
0.005
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFGSLGMDL NWIGYFVGSS GFLGFLDDQF TELKKLQDDG SPDFVAEVLS LFFEDCVKLI SNMARALDKS TGTVDFGQMK LFSCTLVFDT VLVRRGSKLC
101: VLASRNIAKL RITKGKLVQH RLRTHRLRCL QQVDIEYKTL TTKLQDMFNL EKQIIQAGGR VPQVDIN
101: VLASRNIAKL RITKGKLVQH RLRTHRLRCL QQVDIEYKTL TTKLQDMFNL EKQIIQAGGR VPQVDIN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.