Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75878 | Canola | cytosol | 81.38 | 88.72 |
| CDY30166 | Canola | cytosol | 81.38 | 88.72 |
| CDX82406 | Canola | cytosol | 80.69 | 87.97 |
| Bra027169.1-P | Field mustard | cytosol, nucleus, plastid | 72.41 | 84.68 |
| CDY56195 | Canola | cytosol, nucleus, plastid | 72.41 | 84.68 |
| Bra001629.1-P | Field mustard | cytosol | 72.41 | 77.21 |
| KRH23400 | Soybean | nucleus | 75.17 | 72.67 |
| KRH47212 | Soybean | cytosol, nucleus, plastid | 71.03 | 72.03 |
| KRH09934 | Soybean | nucleus | 73.79 | 71.33 |
| VIT_09s0002g03520.t01 | Wine grape | nucleus | 73.1 | 70.67 |
| Os01t0743800-00 | Rice | cytosol, nucleus, plastid | 63.45 | 60.93 |
| GSMUA_Achr10P... | Banana | nucleus | 63.45 | 60.93 |
| KRH44276 | Soybean | nucleus | 68.28 | 60.74 |
| TraesCS1B01G354300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 63.45 | 60.53 |
| GSMUA_Achr11P... | Banana | nucleus | 63.45 | 60.53 |
| TraesCS1D01G343900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 63.45 | 60.53 |
| TraesCS1A01G341600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 62.76 | 59.87 |
| HORVU3Hr1G070880.7 | Barley | cytosol | 60.69 | 57.89 |
| TraesCS3B01G309100.1 | Wheat | cytosol | 59.31 | 56.95 |
| EES19834 | Sorghum | cytosol, nucleus, plastid | 60.0 | 56.49 |
| TraesCS3D01G275300.1 | Wheat | cytosol | 58.62 | 56.29 |
| GSMUA_Achr9P16250_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.86 | 55.1 |
| TraesCS1B01G141500.1 | Wheat | nucleus | 56.55 | 54.3 |
| Os05t0186100-01 | Rice | nucleus | 56.55 | 54.3 |
| OQU77568 | Sorghum | nucleus | 54.48 | 52.32 |
| Zm00001d043505_P001 | Maize | cytosol | 62.76 | 51.12 |
| Zm00001d037694_P001 | Maize | cytosol | 60.0 | 48.88 |
| Zm00001d010791_P001 | Maize | mitochondrion | 55.86 | 47.37 |
| OQU87518 | Sorghum | cytosol | 59.31 | 45.74 |
| HORVU1Hr1G027980.32 | Barley | mitochondrion | 55.86 | 45.0 |
| TraesCS3A01G275400.2 | Wheat | extracellular, mitochondrion | 53.79 | 43.09 |
| AT3G29350.1 | Thale cress | cytosol | 45.52 | 42.31 |
| AT1G03430.2 | Thale cress | cytosol | 44.83 | 41.4 |
| TraesCS1A01G122300.1 | Wheat | nucleus | 45.52 | 40.99 |
| TraesCS1D01G123300.1 | Wheat | nucleus | 45.52 | 40.99 |
| AT3G21510.1 | Thale cress | cytosol, nucleus, plastid | 40.69 | 38.31 |
| HORVU1Hr1G075830.31 | Barley | cytosol, mitochondrion, plastid | 53.79 | 36.11 |
| AT5G39340.2 | Thale cress | extracellular, plasma membrane | 45.52 | 32.35 |
| AT1G80100.3 | Thale cress | cytosol, extracellular, nucleus | 34.48 | 31.25 |
| AT4G04402.1 | Thale cress | extracellular | 33.79 | 29.34 |
| PGSC0003DMT400094075 | Potato | nucleus | 40.69 | 29.06 |
Protein Annotations
| Gene3D:1.20.120.160 | MapMan:11.4.2.2 | EntrezGene:820883 | UniProt:A0A178V965 | ProteinID:AEE75803.1 | Symbol:AHP4 |
| ArrayExpress:AT3G16360 | EnsemblPlantsGene:AT3G16360 | RefSeq:AT3G16360 | TAIR:AT3G16360 | RefSeq:AT3G16360-TAIR-G | EnsemblPlants:AT3G16360.2 |
| TAIR:AT3G16360.2 | UniProt:F4J1I8 | GO:GO:0000160 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004871 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0006468 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 |
| GO:GO:0009736 | GO:GO:0009927 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:HPT_dom_sf | InterPro:IPR008207 | InterPro:IPR036641 | RefSeq:NP_001189912.1 | ProteinID:OAP02334.1 |
| PFAM:PF01627 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007115 | PO:PO:0007616 | PO:PO:0009015 |
| PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009047 | PO:PO:0020100 | PFscan:PS50894 | PANTHER:PTHR28242 |
| PANTHER:PTHR28242:SF4 | SUPFAM:SSF47226 | InterPro:Sig_transdc_His_kin_Hpt_dom | UniParc:UPI0001E92E89 | : | : |
Description
AHP4AHP4 [Source:UniProtKB/TrEMBL;Acc:A0A178V965]
Coordinates
chr3:+:5554197..5555789
Molecular Weight (calculated)
16824.8 Da
IEP (calculated)
8.057
GRAVY (calculated)
-0.786
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MQRQVALIKQ SLFDQGYLDE QFMELEELQD DANPNFVEEV SALYFKDSAR LINNIDQALE RGSFDFNRLD SYMHQFKGSS TSIGASKVKA ECTTFREYCR
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.