Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G343900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 99.34 | 99.34 |
| TraesCS1B01G354300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 99.34 | 99.34 |
| EES19834 | Sorghum | cytosol, nucleus, plastid | 78.29 | 77.27 |
| AT3G16360.2 | Thale cress | nucleus | 59.87 | 62.76 |
| CDX75878 | Canola | cytosol | 54.61 | 62.41 |
| Zm00001d010791_P001 | Maize | mitochondrion | 69.74 | 61.99 |
| CDX82406 | Canola | cytosol | 53.95 | 61.65 |
| CDY30166 | Canola | cytosol | 53.29 | 60.9 |
| Bra027169.1-P | Field mustard | cytosol, nucleus, plastid | 48.03 | 58.87 |
| CDY56195 | Canola | cytosol, nucleus, plastid | 48.03 | 58.87 |
| KRH47212 | Soybean | cytosol, nucleus, plastid | 55.26 | 58.74 |
| TraesCS3A01G275400.2 | Wheat | extracellular, mitochondrion | 69.08 | 58.01 |
| VIT_09s0002g03520.t01 | Wine grape | nucleus | 55.92 | 56.67 |
| Solyc11g070150.1.1 | Tomato | nucleus | 50.66 | 56.2 |
| PGSC0003DMT400047799 | Potato | nucleus | 50.66 | 56.2 |
| KRH09934 | Soybean | nucleus | 55.26 | 56.0 |
| KRH23400 | Soybean | nucleus | 55.26 | 56.0 |
| HORVU1Hr1G075830.31 | Barley | cytosol, mitochondrion, plastid | 78.95 | 55.56 |
| PGSC0003DMT400077451 | Potato | cytosol, nucleus, plastid | 47.37 | 52.94 |
| Bra001629.1-P | Field mustard | cytosol | 46.71 | 52.21 |
| KRH52794 | Soybean | cytosol, nucleus, plastid | 48.68 | 51.75 |
| Solyc08g066350.1.1 | Tomato | cytosol, mitochondrion, nucleus | 46.05 | 51.47 |
| VIT_04s0008g00210.t01 | Wine grape | mitochondrion | 61.18 | 50.27 |
| KRH44276 | Soybean | nucleus | 52.63 | 49.08 |
| TraesCS1A01G122300.1 | Wheat | nucleus | 48.03 | 45.34 |
| KRH74260 | Soybean | cytosol | 35.53 | 34.84 |
| TraesCS4A01G303500.1 | Wheat | cytosol | 33.55 | 34.69 |
| TraesCS4A01G480800.1 | Wheat | cytosol, extracellular | 25.66 | 29.77 |
| TraesCS4A01G302200.1 | Wheat | cytosol | 28.95 | 29.14 |
| TraesCS7A01G016100.1 | Wheat | cytosol, extracellular | 25.0 | 29.01 |
| TraesCS4A01G022400.1 | Wheat | plastid | 27.63 | 28.57 |
| TraesCS4A01G480600.1 | Wheat | cytosol, extracellular | 26.32 | 28.17 |
| TraesCS4A01G479600.1 | Wheat | cytosol | 23.68 | 27.48 |
| TraesCS4A01G480700.2 | Wheat | cytosol, extracellular | 23.68 | 26.47 |
| VIT_11s0016g03170.t01 | Wine grape | cytosol | 36.84 | 26.17 |
| TraesCS6A01G020400.1 | Wheat | extracellular | 23.68 | 25.0 |
| PGSC0003DMT400094075 | Potato | nucleus | 31.58 | 23.65 |
| TraesCS4A01G304100.1 | Wheat | plastid | 26.32 | 20.3 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G341600.1 | EnsemblPlantsGene:TraesCS1A01G341600 | Gene3D:1.20.120.160 | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:HPT_dom_sf | InterPro:IPR036641 | PANTHER:PTHR28242 | PANTHER:PTHR28242:SF3 |
| SUPFAM:SSF47226 | MapMan:11.4.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:531222467..531224405
Molecular Weight (calculated)
17547.7 Da
IEP (calculated)
7.846
GRAVY (calculated)
-0.755
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYANLRRQA ASLKRSLFDQ GYLDEQFCQV EDLQDEASPN FAEEVVSLFF KDSARLVTNI EQAMEKYPKD FNRWDAHMQQ LRGSCFSIGA SKMNNECTSF
101: RNSCGEENAE GCRRTFQKVK REHAILRQKL ESYFQLLRQA GPARAATRPG SM
101: RNSCGEENAE GCRRTFQKVK REHAILRQKL ESYFQLLRQA GPARAATRPG SM
001: MQRQVALIKQ SLFDQGYLDE QFMELEELQD DANPNFVEEV SALYFKDSAR LINNIDQALE RGSFDFNRLD SYMHQFKGSS TSIGASKVKA ECTTFREYCR
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK
Arabidopsis Description
AHP4AHP4 [Source:UniProtKB/TrEMBL;Acc:A0A178V965]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.