Factsheet for VIT_04s0008g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g03520.t01	Wine grape	nucleus	56.22	69.33
PGSC0003DMT400047799	Potato	nucleus	50.27	67.88
Solyc11g070150.1.1	Tomato	nucleus	49.73	67.15
PGSC0003DMT400077451	Potato	cytosol, nucleus, plastid	47.57	64.71
KRH52794	Soybean	cytosol, nucleus, plastid	49.19	63.64
Solyc08g066350.1.1	Tomato	cytosol, mitochondrion, nucleus	46.49	63.24
Os01t0743800-00	Rice	cytosol, nucleus, plastid	50.27	61.59
TraesCS1D01G343900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.27	61.18
TraesCS1B01G354300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.27	61.18
TraesCS1A01G341600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.27	61.18
GSMUA_Achr11P...	Banana	nucleus	49.73	60.53
GSMUA_Achr10P...	Banana	nucleus	48.65	59.6
TraesCS3D01G275300.1	Wheat	cytosol	47.03	57.62
TraesCS3B01G309100.1	Wheat	cytosol	47.03	57.62
HORVU3Hr1G070880.7	Barley	cytosol	47.03	57.24
EES19834	Sorghum	cytosol, nucleus, plastid	46.49	55.84
GSMUA_Achr9P16250_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.32	55.78
TraesCS1B01G141500.1	Wheat	nucleus	44.32	54.3
Os05t0186100-01	Rice	nucleus	43.78	53.64
OQU77568	Sorghum	nucleus	42.7	52.32
Zm00001d043505_P001	Maize	cytosol	48.65	50.56
Zm00001d037694_P001	Maize	cytosol	47.57	49.44
VIT_07s0104g00880.t01	Wine grape	cytosol, nucleus, plastid	38.38	47.02
HORVU1Hr1G027980.32	Barley	mitochondrion	45.41	46.67
VIT_05s0020g02210.t01	Wine grape	cytosol	37.3	45.39
OQU87518	Sorghum	cytosol	45.95	45.21
Zm00001d010791_P001	Maize	mitochondrion	41.62	45.03
VIT_14s0030g00410.t01	Wine grape	cytosol	36.22	44.67
TraesCS3A01G275400.2	Wheat	extracellular, mitochondrion	43.24	44.2
TraesCS1D01G123300.1	Wheat	nucleus	37.3	42.86
TraesCS1A01G122300.1	Wheat	nucleus	37.3	42.86
HORVU1Hr1G075830.31	Barley	cytosol, mitochondrion, plastid	43.78	37.5
VIT_09s0002g06960.t01	Wine grape	cytosol	29.73	35.26
VIT_11s0016g03170.t01	Wine grape	cytosol	36.76	31.78
VIT_13s0074g00740.t01	Wine grape	cytosol	20.0	25.17

Protein Annotations

Gene3D:1.20.120.160	MapMan:11.4.2.2	EMBL:AM435015	ProteinID:CAN69375	ProteinID:CAN69375.1	ProteinID:CCB46516
ProteinID:CCB46516.1	UniProt:F6H360	EMBL:FN595231	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009736	GO:GO:0009927	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0043424	InterPro:HPT_dom_sf
InterPro:IPR008207	InterPro:IPR036641	PFAM:PF01627	PFscan:PS50894	PANTHER:PTHR28242	PANTHER:PTHR28242:SF4
SUPFAM:SSF47226	InterPro:Sig_transdc_His_kin_Hpt_dom	UniParc:UPI0002108CBE	ArrayExpress:VIT_04s0008g00210	EnsemblPlantsGene:VIT_04s0008g00210	EnsemblPlants:VIT_04s0008g00210.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:155674..159931

Molecular Weight (calculated)

21575.5 Da

IEP (calculated)

8.834

GRAVY (calculated)

-0.691

Length

185 amino acids

Sequence
(BLAST)

001: MGKTVRGQWH REILSSPSLS LSPMGGWQRN KGWSHSVTFT RMERNPLQRQ VAYMRRSLFD QGYLDEQFVQ LEDLQDDANP NFVEEIVTLF YTDSARLIHN
101: IEQALESRPL DFIRLDDYMH QFKGSSSSIG AKKVKNECTQ FREHCSARSA EGCVRTFQQV KQEHTILRRK LETYFQLARQ AGLAN

Best Arabidopsis Sequence Match ( AT3G16360.2 )
(BLAST)

001: MQRQVALIKQ SLFDQGYLDE QFMELEELQD DANPNFVEEV SALYFKDSAR LINNIDQALE RGSFDFNRLD SYMHQFKGSS TSIGASKVKA ECTTFREYCR
101: AGNAEGCLRT FQQLKKEHST LRKKLEHYFQ LARQAGPKET ARRPK

Arabidopsis Description

AHP4AHP4 [Source:UniProtKB/TrEMBL;Acc:A0A178V965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.