Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G275300.1 | Wheat | cytosol | 98.01 | 98.01 |
| HORVU3Hr1G070880.7 | Barley | cytosol | 96.03 | 95.39 |
| Os01t0743800-00 | Rice | cytosol, nucleus, plastid | 88.74 | 88.74 |
| TraesCS1B01G354300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 76.16 | 75.66 |
| TraesCS3A01G275400.2 | Wheat | extracellular, mitochondrion | 88.08 | 73.48 |
| Zm00001d043505_P001 | Maize | cytosol | 84.11 | 71.35 |
| TraesCS1B01G141500.1 | Wheat | nucleus | 66.23 | 66.23 |
| OQU87518 | Sorghum | cytosol | 78.15 | 62.77 |
| KRH47212 | Soybean | cytosol, nucleus, plastid | 57.62 | 60.84 |
| CDX82406 | Canola | cytosol | 52.98 | 60.15 |
| CDX75878 | Canola | cytosol | 52.32 | 59.4 |
| AT3G16360.2 | Thale cress | nucleus | 56.95 | 59.31 |
| KRH09934 | Soybean | nucleus | 56.95 | 57.33 |
| KRH23400 | Soybean | nucleus | 56.95 | 57.33 |
| CDY30166 | Canola | cytosol | 50.33 | 57.14 |
| VIT_09s0002g03520.t01 | Wine grape | nucleus | 55.63 | 56.0 |
| Bra027169.1-P | Field mustard | cytosol, nucleus, plastid | 45.7 | 55.65 |
| CDY56195 | Canola | cytosol, nucleus, plastid | 45.7 | 55.65 |
| PGSC0003DMT400077451 | Potato | cytosol, nucleus, plastid | 48.34 | 53.68 |
| Solyc11g070150.1.1 | Tomato | nucleus | 47.68 | 52.55 |
| Solyc08g066350.1.1 | Tomato | cytosol, mitochondrion, nucleus | 47.02 | 52.21 |
| PGSC0003DMT400047799 | Potato | nucleus | 47.02 | 51.82 |
| KRH44276 | Soybean | nucleus | 54.97 | 50.92 |
| Bra001629.1-P | Field mustard | cytosol | 45.7 | 50.74 |
| KRH52794 | Soybean | cytosol, nucleus, plastid | 47.02 | 49.65 |
| VIT_04s0008g00210.t01 | Wine grape | mitochondrion | 57.62 | 47.03 |
| TraesCS4B01G010300.1 | Wheat | extracellular | 33.77 | 34.69 |
| KRH74260 | Soybean | cytosol | 33.11 | 32.26 |
| TraesCS1B01G061500.1 | Wheat | cytosol | 28.48 | 30.07 |
| TraesCS1B01G061400.1 | Wheat | cytosol | 29.8 | 29.8 |
| TraesCS4B01G281000.1 | Wheat | plastid | 28.48 | 29.25 |
| VIT_11s0016g03170.t01 | Wine grape | cytosol | 39.74 | 28.04 |
| TraesCS4B01G011700.1 | Wheat | cytosol | 24.5 | 25.87 |
| TraesCS6B01G027800.1 | Wheat | extracellular | 25.17 | 25.68 |
| PGSC0003DMT400094075 | Potato | nucleus | 33.11 | 24.63 |
| TraesCS5B01G378400.2 | Wheat | extracellular, vacuole | 27.81 | 24.14 |
| TraesCS4B01G011600.1 | Wheat | mitochondrion, plastid | 29.8 | 23.94 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G309100.1 | EnsemblPlantsGene:TraesCS3B01G309100 | Gene3D:1.20.120.160 | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:HPT_dom_sf | InterPro:IPR008207 | InterPro:IPR036641 | InterPro:Sig_transdc_His_kin_Hpt_dom |
| ncoils:Coil | PANTHER:PTHR28242 | PANTHER:PTHR28242:SF3 | PFAM:PF01627 | PFscan:PS50894 | SEG:seg |
| SUPFAM:SSF47226 | MapMan:11.4.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:497458955..497460523
Molecular Weight (calculated)
17275.6 Da
IEP (calculated)
8.320
GRAVY (calculated)
-0.654
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSNLRRQA ASLKKGLFDQ GHLDEQFRQV EDLQDEASPN FVEEVVVVFF KDSGRLISNL EQALEKYPRD FSRWDAYMQQ LKGSCSSIGA SRMKNECMSF
101: RDNCGQRNVE GCMGSLQKLK REHAILRQKL ESYFQLLRQA GPAGAATRPA M
101: RDNCGQRNVE GCMGSLQKLK REHAILRQKL ESYFQLLRQA GPAGAATRPA M
001: MTNIGKCMQG YLDEQFMELE ELQDDANPNF VEEVSALYFK DSARLINNID QALERGSFDF NRLDSYMHQF KGSSTSIGAS KVKAECTTFR EYCRAGNAEG
101: CLRTFQQLKK EHSTLRKKLE HYFQASQ
101: CLRTFQQLKK EHSTLRKKLE HYFQASQ
Arabidopsis Description
AHP4AHP4 [Source:UniProtKB/TrEMBL;Acc:A0A178V965]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.