CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G343900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	77.92	78.95
TraesCS1B01G354300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	77.92	78.95
TraesCS1A01G341600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	77.27	78.29
Zm00001d010791_P001	Maize	mitochondrion	81.82	73.68
AT3G16360.2	Thale cress	nucleus	56.49	60.0
CDX75878	Canola	cytosol	50.65	58.65
CDX82406	Canola	cytosol	50.0	57.89
KRH47212	Soybean	cytosol, nucleus, plastid	53.25	57.34
CDY30166	Canola	cytosol	48.7	56.39
Bra027169.1-P	Field mustard	cytosol, nucleus, plastid	44.16	54.84
CDY56195	Canola	cytosol, nucleus, plastid	44.16	54.84
OQU87518	Sorghum	cytosol	66.88	54.79
VIT_09s0002g03520.t01	Wine grape	nucleus	53.25	54.67
KRH09934	Soybean	nucleus	51.95	53.33
OQU77568	Sorghum	nucleus	51.95	52.98
KRH23400	Soybean	nucleus	51.3	52.67
PGSC0003DMT400047799	Potato	nucleus	45.45	51.09
Solyc11g070150.1.1	Tomato	nucleus	45.45	51.09
KRH52794	Soybean	cytosol, nucleus, plastid	46.75	50.35
PGSC0003DMT400077451	Potato	cytosol, nucleus, plastid	44.16	50.0
Solyc08g066350.1.1	Tomato	cytosol, mitochondrion, nucleus	44.16	50.0
Bra001629.1-P	Field mustard	cytosol	43.51	49.26
KRH44276	Soybean	nucleus	50.65	47.85
HORVU1Hr1G075830.31	Barley	cytosol, mitochondrion, plastid	65.58	46.76
VIT_04s0008g00210.t01	Wine grape	mitochondrion	55.84	46.49
KRH74260	Soybean	cytosol	33.77	33.55
EES15189	Sorghum	cytosol, extracellular	31.17	33.33
OQU89026	Sorghum	cytosol	31.17	33.1
VIT_11s0016g03170.t01	Wine grape	cytosol	40.26	28.97
PGSC0003DMT400094075	Potato	nucleus	30.52	23.15

Protein Annotations

Gene3D:1.20.120.160	MapMan:11.4.2.2	EntrezGene:8068945	UniProt:C5Z1C7	EnsemblPlants:EES19834	ProteinID:EES19834
ProteinID:EES19834.1	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009719	GO:GO:0009736	GO:GO:0009927	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	GO:GO:0043424	InterPro:HPT_dom_sf	InterPro:IPR008207	InterPro:IPR036641
ProteinID:OQU78323.1	ProteinID:OQU78324.1	PFAM:PF01627	PANTHER:PTHR28242	PANTHER:PTHR28242:SF3	EnsemblPlantsGene:SORBI_3009G202900
SUPFAM:SSF47226	InterPro:Sig_transdc_His_kin_Hpt_dom	UniParc:UPI0001A890ED	RefSeq:XP_002441404.1	:	:

Description

hypothetical protein

Coordinates

chr9:-:55183741..55190886

Molecular Weight (calculated)

17683.9 Da

IEP (calculated)

6.501

GRAVY (calculated)

-0.678

Length

154 amino acids

Sequence
(BLAST)

001: MEYSNLQQQA SSLKKSLFDQ GYLDEQFCQI EDLQDEASPN FTEEVVSLFF KNSTRLMAII EQAMEKNPRD FSRWDVNMQQ LKGSCCSIGA SRMKNECTSF
101: RNSCGDENAE GCMRSFQNLK REHGVLRQKL ESYFQLLRQA GHAVSVTATR PRGM

Best Arabidopsis Sequence Match ( AT3G16360.1 )
(BLAST)

001: MTNIGKCMQG YLDEQFMELE ELQDDANPNF VEEVSALYFK DSARLINNID QALERGSFDF NRLDSYMHQF KGSSTSIGAS KVKAECTTFR EYCRAGNAEG
101: CLRTFQQLKK EHSTLRKKLE HYFQASQ

Arabidopsis Description

AHP4AHP4 [Source:UniProtKB/TrEMBL;Acc:A0A178V965]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.