Factsheet for Solyc04g056410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g017540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	Solyc07g017540.2.1	AT5G20850.1	17227544
AT3G19210.1	Solyc07g017540.2.1	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77966	Soybean	nucleus	65.93	43.0
CDX99258	Canola	nucleus	65.08	42.12
AT3G19210.1	Thale cress	nucleus	64.91	41.87
Bra022395.1-P	Field mustard	nucleus	64.91	41.73
CDX92308	Canola	nucleus	64.74	41.71
GSMUA_Achr5P24600_001	Banana	nucleus	63.71	40.04
EES07568	Sorghum	nucleus	63.54	38.45
Zm00001d018151_P003	Maize	nucleus	62.86	38.12
HORVU6Hr1G078680.2	Barley	nucleus	63.37	38.08
VIT_03s0063g00580.t01	Wine grape	nucleus	63.2	37.93
TraesCS6A01G321200.1	Wheat	nucleus	62.86	37.92
Os02t0762800-00	Rice	nucleus	61.67	36.94
Solyc08g077650.1.1	Tomato	cytosol	3.24	36.54
TraesCS6B01G351900.1	Wheat	nucleus	62.35	36.49
TraesCS6D01G300900.1	Wheat	cytosol	62.35	34.56
Solyc08g077580.1.1	Tomato	cytosol	6.3	21.39
HORVU7Hr1G119270.3	Barley	nucleus	9.2	19.29
HORVU1Hr1G071540.2	Barley	nucleus	8.69	18.68
Solyc01g068300.1.1	Tomato	cytosol	11.58	17.44
Solyc08g061410.1.1	Tomato	cytosol	10.05	13.44
Solyc07g053870.2.1	Tomato	plastid	20.1	13.3
Solyc08g062000.1.1	Tomato	cytosol	8.52	12.79
Solyc08g061990.1.1	Tomato	mitochondrion	7.84	11.95
Solyc02g033050.1.1	Tomato	nucleus	12.1	11.29
Solyc08g077610.1.1	Tomato	nucleus	12.27	10.76
Solyc09g066480.2.1	Tomato	nucleus	22.15	10.72
Solyc01g068320.1.1	Tomato	cytosol	11.58	10.18
Solyc04g054440.1.1	Tomato	nucleus	11.24	10.08
Solyc04g050150.2.1	Tomato	nucleus	20.27	9.78
Solyc08g077690.2.1	Tomato	nucleus	12.27	9.72
Solyc01g068280.2.1	Tomato	nucleus	19.76	9.55
Solyc01g060460.1.1	Tomato	nucleus	11.41	8.8
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	17.04	7.89
Solyc01g109970.2.1	Tomato	extracellular	10.73	6.95
Solyc08g061340.1.1	Tomato	cytosol	2.39	6.28
Solyc06g050510.2.1	Tomato	nucleus	11.93	5.44
Solyc08g077600.1.1	Tomato	cytosol	2.56	3.82
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	1.53	3.73
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	1.02	1.63
Solyc08g077670.1.1	Tomato	cytosol	1.19	1.55
Solyc08g062070.1.1	Tomato	cytosol	0.34	1.5
Solyc03g061640.1.1	Tomato	cytosol	0.17	0.6
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	0.17	0.57
Solyc08g061370.1.1	Tomato	cytosol	0.17	0.57
Solyc08g074520.1.1	Tomato	nucleus	0.0	0.0
Solyc08g062080.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	0.0	0.0
Solyc08g062060.1.1	Tomato	nucleus	0.0	0.0
Solyc08g061420.1.1	Tomato	cytosol	0.0	0.0
Solyc08g061390.1.1	Tomato	cytosol	0.0	0.0
Solyc08g061350.1.1	Tomato	mitochondrion	0.0	0.0
Solyc04g050160.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.120.850	MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR038718	UniProt:K4BST9
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF889
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc04g056410.2	EnsemblPlants:Solyc04g056410.2.1
UniParc:UPI0002765C66	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:54183776..54194900

Molecular Weight (calculated)

65923.4 Da

IEP (calculated)

8.250

GRAVY (calculated)

-0.528

Length

587 amino acids

Sequence
(BLAST)

001: MVNFTNPGIL GDAAHFRRYF ETPIICGREP TATEEEKKLG SDRSAELSSK VNQFILRRTN ALLSNHLPPK IIEVVCCKLT PLQSELYNHF IHSKNVKRAI
101: AEEAKQSKIL AYITALKKLC NHPKLIYDTI RGGSPGTSGF EDCIRFFPPE MFSGRCGSWT GGAGLWVELS GKMHVLARLL AQLRQKTDDR IVLVSNYTQT
201: LDLFSQLCRE RRYPFLRLDG TTSISKRQKL VNHFNDPAKD EFAFLLSSKA GGCGLNLIGG NRLVLFDPDW NPANDKQAAA RVWRDGQKKR VYIYRFLSTG
301: TIEEKVYQRQ MSKEGLQKVI QQEQTDSDIQ GNCLSAEDLR DLFTFHDSRS EIHEKMSCDR CQPDAMMPDD NIIADLHTQG HQPDQEDIGG FAGVAGCLHT
401: LQSSERQIGA PKEEDLASWG HHFSPKSVPD VIFQSAAGDE VSFVFTCQVD GKLVPVESTV KSKQEVENRD SPHFKEMLMR KATFSSPRQT PSLKTLSSSK
501: LSSEKENSFP KQDLILQAQS QALSASTPSG TSMSTFPAFF KPLQKPRSKL NKPLEDTKIS EKSKLSSENL LPKKRLAPDY IYDDDFA

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.