CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99597
OQU79150
OQU83843

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	EER99597	AT5G20850.1	17227544
AT3G19210.1	OQU79150	AT5G20850.1	17227544
AT3G19210.1	OQU83843	AT5G20850.1	17227544
AT3G19210.1	EER99597	AT5G20850.1	18430956
AT3G19210.1	OQU79150	AT5G20850.1	18430956
AT3G19210.1	OQU83843	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018151_P003	Maize	nucleus	94.85	95.04
TraesCS6A01G321200.1	Wheat	nucleus	84.54	84.28
HORVU6Hr1G078680.2	Barley	nucleus	84.23	83.62
Os02t0762800-00	Rice	nucleus	84.33	83.47
TraesCS6B01G351900.1	Wheat	nucleus	84.43	81.66
HORVU1Hr1G071540.2	Barley	nucleus	21.86	77.66
TraesCS6D01G300900.1	Wheat	cytosol	84.23	77.15
HORVU7Hr1G119270.3	Barley	nucleus	22.27	77.14
GSMUA_Achr5P24600_001	Banana	nucleus	65.88	68.42
KRH77966	Soybean	nucleus	61.55	66.33
CDX92308	Canola	nucleus	61.24	65.2
AT3G19210.1	Thale cress	nucleus	61.13	65.16
CDX99258	Canola	nucleus	60.82	65.05
Bra022395.1-P	Field mustard	nucleus	61.03	64.84
Solyc04g056410.2.1	Tomato	nucleus	38.45	63.54
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	23.61	62.06
VIT_03s0063g00580.t01	Wine grape	nucleus	60.41	59.92
EER91354	Sorghum	plastid	19.28	21.06
KXG27526	Sorghum	cytosol	18.97	17.52
EES02658	Sorghum	nucleus	19.69	15.81
KXG38419	Sorghum	nucleus	21.34	13.96
KXG34530	Sorghum	endoplasmic reticulum, golgi, plasma membrane	2.37	13.14
EER92800	Sorghum	nucleus, plastid	12.78	13.12
KXG24379	Sorghum	cytosol	12.68	12.68
KXG31163	Sorghum	nucleus	13.2	10.02
KXG37026	Sorghum	nucleus	11.96	9.43
KXG22701	Sorghum	mitochondrion	19.69	9.33
OQU77943	Sorghum	mitochondrion	13.92	9.26

Protein Annotations

Gene3D:1.20.120.850	MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:C5XST0	ncoils:Coil
EnsemblPlants:EES07568	ProteinID:EES07568	ProteinID:EES07568.2	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0045003	GO:GO:0051701
GO:GO:0071248	GO:GO:0071480	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF889	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
EnsemblPlantsGene:SORBI_3004G307900	SUPFAM:SSF52540	unigene:Sbi.3536	UniParc:UPI0007F19E7E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:64556145..64565464

Molecular Weight (calculated)

107500.0 Da

IEP (calculated)

7.007

GRAVY (calculated)

-0.514

Length

970 amino acids

Sequence
(BLAST)

001: MPSRSQYNRR GSDGDEDEIV AVSSDLEESE SEANRGAEAD DDDEYVGESS DAGGGDEAEE AGSSDCGEGG DGDGDDHDGH GGRPLRGLRR GVAAPDKERK
101: SQNVDALVRG NLVVRRQPLI PRILSVSDAA AIARKPFKPP CQNGYSDNNE QLARRLSARK RFVPWGSTQT FAVMHHLPQS PVVASDSSSE KEEPLPPGIE
201: PLILWQRDEC EKENCNSASI EVDHLLVRYL RPHQREGVQF MFDCVSGSLS ADGISGCILA DDMGLGKTLQ SITLLYTLLC QGFDDKPMVK RAVIVTPTSL
301: VSNWESEIIK WLKGRVQLLA LCESTRADVL SGIESFLKPL SRLQVLIISY ETFRMHSSKF ERPGSCDLLI CDEAHRLKND QTLTNKALAA LPCTRRILLS
401: GTPMQNDLEE FFSMVNFTNP GVLGDASYFR RYYEAPIICG REPTASTEEK KLGSERSAEL SAKVNQFILR RTNALLSNHL PPKIVEVVCC KLTPLQTTLY
501: NHFIHSKNVK RLISEEAKQS KILAYITALK KLCNHPKLIY DTIKSNNSGG SGFDDCLRFF PPELFSGRSG SWTGGGGMWV ELSGKMHVLA RLLGHLRQKT
601: DDRIVLVSNY TQTLDLFVQL CRERRYPYVR LDGATSINKR QKLVNQFNDL SRDEFVFLLS SKAGGCGLNL VGGNRLVLFD PDWNPANDKQ AAARVWRDGQ
701: KKRVYIYRFL STGTIEEKVY QRQMSKEGLQ KVIQQEQADN KMQGSSLSTE DLRDLFTFHE HVRSEIHENL KCSRCDKDGN SVLDGTGFAA TDHKASMPRV
801: QDYADIGRFG EISGCLQKMN SAHHQIGRPT EEDLGSWGHH CDPSTVPDTI LQCSAGEEVS FVFTNQVDGK LVPVESMVRS AAHQQNGIAA TGEKGVQKTN
901: SPSKPGRQSL NGKNLKLMGF NLKNSSLKCS TKSRTSPNCL QGLKKTSPSL DQPQSKKLHV ASDISDDDFV

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.