CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G024970.1	Barley	nucleus	22.54	65.14
TraesCS2A01G140400.2	Wheat	cytosol	60.74	60.04
TraesCS2B01G164300.3	Wheat	nucleus	60.63	59.94
TraesCS4D01G279200.1	Wheat	cytosol	58.94	58.57
TraesCS4B01G280600.1	Wheat	nucleus	58.52	57.91
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	59.15	56.12
TraesCS2D01G143100.1	Wheat	cytosol	36.3	55.32
HORVU4Hr1G074230.3	Barley	nucleus, plastid	58.2	53.61
Os03t0165266-00	Rice	nucleus	60.74	53.45
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	35.77	49.63
VIT_03s0038g04290.t01	Wine grape	nucleus	11.01	47.06
Bra021841.1-P	Field mustard	cytosol	36.19	44.76
KRH27453	Soybean	cytosol	41.16	44.05
AT2G16390.2	Thale cress	nucleus	39.37	41.75
Solyc01g109970.2.1	Tomato	extracellular	39.37	41.01
KRH20806	Soybean	cytosol	40.95	40.61
VIT_03s0038g00030.t01	Wine grape	nucleus	40.63	40.38
PGSC0003DMT400079488	Potato	nucleus	39.47	40.32
CDX89710	Canola	nucleus	36.4	39.81
KXG24379	Sorghum	cytosol	38.52	37.53
Bra000888.1-P	Field mustard	cytosol	17.57	36.17
GSMUA_Achr6P04530_001	Banana	nucleus	32.28	34.39
KXG37026	Sorghum	nucleus	23.49	18.05
KXG31163	Sorghum	nucleus	22.33	16.51
EER91354	Sorghum	plastid	14.29	15.2
OQU77943	Sorghum	mitochondrion	22.22	14.4
EES07568	Sorghum	nucleus	13.12	12.78
KXG27526	Sorghum	cytosol	13.65	12.29
KXG38419	Sorghum	nucleus	17.04	10.86
KXG34530	Sorghum	endoplasmic reticulum, golgi, plasma membrane	1.9	10.29
EES02658	Sorghum	nucleus	12.8	10.02
KXG22701	Sorghum	mitochondrion	13.76	6.35

Protein Annotations

MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:C5WWU8	EnsemblPlants:EER92800
ProteinID:EER92800	ProteinID:EER92800.2	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF799
SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	EnsemblPlantsGene:SORBI_3001G494100	SUPFAM:SSF52540
UniParc:UPI00081AC08B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:76315078..76321347

Molecular Weight (calculated)

106482.0 Da

IEP (calculated)

7.066

GRAVY (calculated)

-0.446

Length

945 amino acids

Sequence
(BLAST)

001: MGSAGQKRQK LGSEHTSSPG TQSQSNIFLA NKRLRLQFLE QVNELKAWSV TKDLKAITAK RRELFGIIER LRQVPIEQLY SSPFPKPSDA RLDNFGKMES
101: SYNPDNVINL DADEENVEYH TQVNAGNTEA DSTASADDSG DKDRVKSFGD ENSSSNRNDN YIQQNPLLEH PVGHQEITRP DNCNSSTEPQ ALVKQVKDAM
201: DNDNVSAEAK KIVLFDCHST SEQQPLMKQA RGNIKTNTEN GLKEKGKIGG TIAKHVGSYE VSCEILQNEP HSNEGNHHDN GSPVGELDDL WIGMSVALAC
301: SEKNNQVNLS IVPFVSNSEE TEDACNHDFL LKDDLGMVCR ICGLIQQRID KIFEHSWKKR NQAYRSYPIK QRNSGDPDAT MNALGTILSV APDTLSLHPQ
401: HSEQMKPHQV EGFNFLIKNL ADEDNPGGCI LAHAPGSGKT FLLISFVHSF LARYPAGRPL IMLPKGILGT WKSEFLCWQV ENIPLYDFYS SKASSRPEQL
501: KVLKLWEESK SILLLGYQQF AHIISDNSSD RETIMCKEKL LRVPSLVILD EGHTSRNDQT DLLNALETIR TPRKVVLSGT LFQNHVSEVF NILNLVRPRF
601: LKMQRSRAIM KSILTKLDMS GMAIRSKMIS EKVFFELIEE NLQKDSKTMR VMIIQNLRKL TENILHYYQG EILKELPGLV DFTVLLNMSS KQEDIIKGLA
701: GLKRFEAHAK CNAVSLHPCL KDVKIVDKKN RNINKRMMDS IVCGIDISDG VKAKFIHNLL SLSEAAGEKV LVFSQYVRSL HFLETLFTKM KGWKPGVNTF
801: LMDGSSTQEQ REQAIERFNN SPKAKVFFGS IKACGEGISL VGASRIVILD VHENPAVMRQ AIGRAFRPGQ SKVVYCYRLV ASGSSEEEDH YIAFKKERVS
901: KLWFEWDELC SNEDFELAKV DVSDCKDMFL ESPALQEDIK SLFKR

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.