CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20806	Soybean	cytosol	79.39	73.56
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	52.89	68.58
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	45.87	60.27
VIT_03s0038g04290.t01	Wine grape	nucleus	14.95	59.73
VIT_03s0038g00030.t01	Wine grape	nucleus	62.06	57.62
CDX89710	Canola	nucleus	54.7	55.9
AT2G16390.2	Thale cress	nucleus	56.4	55.89
Solyc01g109970.2.1	Tomato	extracellular	56.51	55.02
PGSC0003DMT400079488	Potato	nucleus	56.51	53.95
HORVU2Hr1G024970.1	Barley	nucleus	19.14	51.68
Os08t0243866-00	Rice	endoplasmic reticulum	37.49	51.24
Bra021841.1-P	Field mustard	cytosol	43.83	50.65
Os06t0255700-01	Rice	cytosol	49.38	46.09
TraesCS2B01G208700.1	Wheat	cytosol	46.66	44.98
TraesCS5D01G344400.1	Wheat	nucleus	47.34	43.63
TraesCS2D01G189900.1	Wheat	nucleus	47.0	43.59
TraesCS5A01G340400.1	Wheat	nucleus	47.11	43.42
Zm00001d024677_P003	Maize	cytosol	46.09	42.84
GSMUA_Achr6P04530_001	Banana	nucleus	42.92	42.73
KXG24379	Sorghum	cytosol	46.89	42.68
HORVU5Hr1G085320.1	Barley	plastid	46.66	42.26
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	46.66	42.26
TraesCS4D01G279200.1	Wheat	cytosol	45.07	41.85
Zm00001d049605_P037	Maize	cytosol	46.09	41.66
TraesCS4B01G280600.1	Wheat	nucleus	44.96	41.57
TraesCS2A01G140400.2	Wheat	cytosol	44.96	41.53
TraesCS2B01G164300.3	Wheat	nucleus	44.85	41.42
EER92800	Sorghum	nucleus, plastid	44.05	41.16
TraesCS2A01G182200.1	Wheat	plastid	47.11	40.04
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	45.07	39.96
Bra000888.1-P	Field mustard	cytosol	20.27	39.0
HORVU4Hr1G074230.3	Barley	nucleus, plastid	44.05	37.91
Os03t0165266-00	Rice	nucleus	45.19	37.15
Os08t0289400-00	Rice	cytosol, nucleus	21.97	36.74
TraesCS2D01G143100.1	Wheat	cytosol	24.35	34.68
KRH05276	Soybean	cytosol, nucleus	6.57	23.39
KRH39939	Soybean	nucleus	15.97	22.85
KRH32203	Soybean	cytosol, mitochondrion, nucleus	6.23	19.93
KRH46527	Soybean	nucleus	22.99	17.68
KRG97679	Soybean	nucleus	24.46	17.49
KRG88505	Soybean	endoplasmic reticulum, nucleus	23.44	17.18
KRH23851	Soybean	mitochondrion, nucleus	22.54	17.07
KRH46528	Soybean	cytosol, extracellular, nucleus	23.67	16.77
KRH73247	Soybean	nucleus	24.35	16.41
KRH59600	Soybean	cytosol, nucleus, plastid	14.04	15.82
KRH25617	Soybean	nucleus	14.5	14.71
KRH77966	Soybean	nucleus	14.04	13.78
KRH40956	Soybean	nucleus	15.18	13.01
KRH34128	Soybean	nucleus	15.06	11.78
KRG92726	Soybean	nucleus	16.87	10.03
KRH19578	Soybean	nucleus	13.59	9.8
KRH40039	Soybean	mitochondrion	13.59	5.86
KRH23760	Soybean	mitochondrion	13.59	5.86
KRH28211	Soybean	mitochondrion	0.11	1.09
KRH77275	Soybean	cytosol	0.11	1.09

Protein Annotations

EntrezGene:100780454	MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
EMBL:ACUP02007805	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G236100	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1LVC4	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	EnsemblPlants:KRH27453	ProteinID:KRH27453	ProteinID:KRH27453.1	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807	SMART:SM00487
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI000233CD40	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:39492708..39499941

Molecular Weight (calculated)

100261.0 Da

IEP (calculated)

5.707

GRAVY (calculated)

-0.424

Length

883 amino acids

Sequence
(BLAST)

001: MESADDVSAS KRPLPTGFSP GPDGPKRLRL SSDSLPYPAC DQIEPKTPKN PNVVDYSNPF AITDILDRLE NGKFGSVTKD IEALIALKMQ IMGPYFAKYP
101: ILVNQLLKVV THHDEETPKL ENQQVTGLTH QSVIDLEGEY TEKDVPAVPN TVVIIDSDEE DDRDKKSVIP FHEVVLPRKV APSPALKVIG YHTYLGESND
201: LKIEINMADK GNNTRSNKGV YVGAQGEEED KADTEDDGLQ DIWKEMSMAI ECSKDVSEDP EPEEEEEEDD NCDHSFVLKD DLGYVCRVCG VIDRKIETIF
301: EFQYKVKRST RTYASDSWNS KGKADVFGIN VAEDDLVVTD IAAHPRHMKQ MKPHQVEGFN FLVRNLAGDH PGGCILAHAP GSGKTFMIIS FMQSFLGKYP
401: NARPLVVLPK GILSTWKKEF QTWQVEDIPL YDLYTVKADS RSQQLEVLKQ WMEQKSILFL GYKQFSSIVC DNGTNNTSLS CQEILLKIPT ILILDEGHNP
501: RNENTDMVQS LAKVQTARKV VLSGTLYQNH VREVFNILNL VRPKFLKMET SRPIVRRIHS RVHIPGVRSF YDLVENTLQK DTDFKRKIAV IQDLREMTSK
601: VLHYYKGDFL DELPGLVDFT VVLTLSPRQK PEIQKLKKLS RRKFKINSVG SAVYLHPKLK PLAENCGENS TSDNIMDDLI EKLDMRDGVK SKFYYNMLNL
701: CESAGEKLLV FSQYLLPLKY LERLTMKWKG WSLGREIFVI SGESSSEQRE WSMEKFNNSP DARVFFGSIK ACGEGISLVG ASRIIILDVH LNPSVTRQAI
801: GRAFRPGQMK KVFVYRLVSA DSPEEEDHNT CFKKELISKM WFEWNEYCGD RAFEVEAVEV KECGDLFLES PLLGEDVKAL YKR

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.