Factsheet for GSMUA_Achr6P04530_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	36.75	48.51
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	34.16	44.49
VIT_03s0038g04290.t01	Wine grape	nucleus	10.82	43.44
KRH27453	Soybean	cytosol	42.73	42.92
Os08t0243866-00	Rice	endoplasmic reticulum	29.88	41.02
Os06t0255700-01	Rice	cytosol	42.84	40.17
VIT_03s0038g00030.t01	Wine grape	nucleus	42.73	39.85
TraesCS2B01G208700.1	Wheat	cytosol	41.04	39.74
AT2G16390.2	Thale cress	nucleus	39.57	39.39
Solyc01g109970.2.1	Tomato	extracellular	40.14	39.25
KRH20806	Soybean	cytosol	41.83	38.93
PGSC0003DMT400079488	Potato	nucleus	40.36	38.7
TraesCS2D01G189900.1	Wheat	nucleus	41.38	38.55
HORVU2Hr1G024970.1	Barley	nucleus	13.87	37.61
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	41.26	37.54
TraesCS5A01G340400.1	Wheat	nucleus	40.36	37.37
CDX89710	Canola	nucleus	36.3	37.27
TraesCS5D01G344400.1	Wheat	nucleus	40.25	37.27
KXG24379	Sorghum	cytosol	40.7	37.22
Bra021841.1-P	Field mustard	cytosol	31.79	36.91
Zm00001d024677_P003	Maize	cytosol	39.35	36.74
Zm00001d049605_P037	Maize	cytosol	40.14	36.44
Os08t0289400-00	Rice	cytosol, nucleus	21.65	36.36
HORVU5Hr1G085320.1	Barley	plastid	39.8	36.21
TraesCS2A01G182200.1	Wheat	plastid	41.26	35.23
TraesCS2A01G140400.2	Wheat	cytosol	36.64	34.0
TraesCS2B01G164300.3	Wheat	nucleus	36.41	33.79
TraesCS4D01G279200.1	Wheat	cytosol	35.85	33.44
TraesCS4B01G280600.1	Wheat	nucleus	35.51	32.98
EER92800	Sorghum	nucleus, plastid	34.39	32.28
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	35.4	31.53
TraesCS2D01G143100.1	Wheat	cytosol	21.08	30.16
HORVU4Hr1G074230.3	Barley	nucleus, plastid	34.72	30.02
Os03t0165266-00	Rice	nucleus	35.96	29.7
Bra000888.1-P	Field mustard	cytosol	15.11	29.19
GSMUA_Achr7P06840_001	Banana	nucleus	15.9	14.95
GSMUA_Achr8P01860_001	Banana	nucleus	17.36	14.26
GSMUA_Achr7P00330_001	Banana	plastid	9.24	9.44
GSMUA_Achr5P24600_001	Banana	nucleus	9.81	9.31
GSMUA_Achr4P25080_001	Banana	nucleus	11.84	9.31
GSMUA_AchrUn_...	Banana	cytosol	9.24	7.41
GSMUA_Achr7P23270_001	Banana	nucleus	10.71	6.67
GSMUA_Achr4P27500_001	Banana	mitochondrion	10.94	4.73
GSMUA_Achr4P25070_001	Banana	golgi	0.56	1.98

Protein Annotations

EnsemblPlants:GSMUA_Achr6P04530_001	EnsemblPlants:GSMUA_Achr6T04530_001	EnsemblPlantsGene:GSMUA_Achr6G04530_001	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	InterPro:SNF2-like_sf	InterPro:SNF2_N	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807	PFAM:PF00176
SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000295FF3F	UniProt:M0T451	MapMan:12.4.1.3.3	:

Description

DRD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G04530_001]

Coordinates

chr6:+:3121057..3129699

Molecular Weight (calculated)

100921.0 Da

IEP (calculated)

6.577

GRAVY (calculated)

-0.465

Length

887 amino acids

Sequence
(BLAST)

001: MHFQGHKRRK INNEDSNDNC ISNLKTPPLN YGKIGGSSKV IDYSNDFALT NLLERLEDGK YGSVTKEYEA LHSQRMQVIN FLSALQPSIA SRTFQGGGST
101: STNLSTRQNQ MKSGQHGDNL SHDIIDLEVD TMEGAANPVR IPVEQTQDAV GNISLHSSDF ESVTRKGKLD AARGPLNTPP VDEDNKEETT VIIVDSDEED
201: ASHQGKTKYD CHPDHEVLEF GASLASQIQK HISRASKLAQ EVNLYQLVPY DQGIGRSVCT TNFKPNWQPS VHFEKVVLQT VDEKQRFQDV VDEKNMEMRC
301: ERQAAEAPNV VKTLYSNAEM NKEKECDGNP KFVSSTAIKD ISSGMGSLYE VDKVSSQSDG LEDLWKDMSL AMEYSKIDTS DDQALVQQEE ECNHSYLLQD
401: DFGLVCRICG VIQKRIDTIF DFQWTKQSCH LTSCSVCLYQ GSRHDTIGLE DDFIAAELSI HPRHLKQMKP HQLEGFNFLV KNLVTDKPGG CILAHAPGSG
501: KTFMLISFIQ SFLAKYPLKK PLVILPKGIL PTWKKEFQRW QVEDLPIYDF YSSKADNRSQ QLEVSAACRE MLLKIPSLLI LDEGHTPRNE DTFFLRMETS
601: RVIVKRVLSR IYISGGRKLS KSSVDNAFYD LVEETLQHDE NFKRKVTVIR DLRELTKDVL HYYKGDFLEE LPGLVDFTVL LNLSAKQRVY VQKLAKFEKF
701: KRTSMGSAVY IHPHLYDTAE KASGDRVAFF NDDKIDSLLE SLNIRDGVKT KFFLNILSLA ESAGEKLLAF SQYILPLKFL ERLIVKTKGW HLGKEIFMIS
801: GDSTSEQREW SMEQFNNSPD AKVFFGSIKA CGEGISLEFH YTSFSKEFIS KMWFEFVLGK SYHRRRYQGG VQKVILWLMR GRAYDRL

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.