Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG34530 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 6.77 | 79.43 |
| CDX78226 | Canola | cytosol | 7.12 | 78.92 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 27.0 | 76.31 |
| Solyc08g074500.2.1 | Tomato | cytosol, nucleus, plastid | 42.54 | 68.85 |
| KXG22701 | Sorghum | mitochondrion | 68.42 | 68.55 |
| Zm00001d039160_P031 | Maize | cytosol, mitochondrion, nucleus, plasma membrane | 68.23 | 68.49 |
| TraesCS1B01G476500.1 | Wheat | mitochondrion | 67.69 | 67.13 |
| HORVU1Hr1G094870.2 | Barley | mitochondrion | 67.64 | 67.09 |
| TraesCS1D01G450200.1 | Wheat | mitochondrion | 67.59 | 67.04 |
| VIT_15s0024g00350.t01 | Wine grape | mitochondrion | 65.94 | 66.91 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 67.35 | 66.8 |
| KRH23760 | Soybean | mitochondrion | 65.79 | 65.95 |
| KRH40039 | Soybean | mitochondrion | 64.77 | 64.92 |
| Bra007061.1-P | Field mustard | mitochondrion | 63.21 | 63.33 |
| CDX73492 | Canola | mitochondrion | 63.16 | 62.28 |
| AT3G54280.2 | Thale cress | mitochondrion | 62.96 | 60.69 |
| CDX78225 | Canola | mitochondrion | 56.24 | 57.16 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 8.67 | 20.48 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 9.26 | 20.34 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.43 | 19.33 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 8.92 | 16.22 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 6.68 | 14.53 |
| GSMUA_Achr7P23270_001 | Banana | nucleus | 10.04 | 14.47 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 6.87 | 13.06 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 1.36 | 11.07 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 4.73 | 10.94 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:12.4.1.4.2 | MapMan:15.3.5.7.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:DUF3535 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSMUA_Achr4G27500_001 | EnsemblPlants:GSMUA_Achr4P27500_001 | EnsemblPlants:GSMUA_Achr4T27500_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR011989 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M0SSL2 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFAM:PF12054 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR36498 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF48371 | SUPFAM:SSF52540 | UniParc:UPI000296068D |
| SEG:seg | : | : | : | : | : |
Description
Putative TATA-binding protein-associated factor 172 [Source:GMGC_GENE;Acc:GSMUA_Achr4G27500_001]
Coordinates
chr4:-:26285255..26312061
Molecular Weight (calculated)
228657.0 Da
IEP (calculated)
6.394
GRAVY (calculated)
-0.101
Length
2052 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAQHSSRLHR LLTLLDTGST QATRFAAARQ IGDIAKSHPQ DLNSLLKKVS QYLRSRNWDT RVAAAHAIGS IAENVRHTSL KELLKSLEGE LMEAGYSDVC
0101: KDVGASVSDM CPNPTAGLSF KSFDINKVLE FGSPLLASGG QEFDVASDSS KSPAERLAHQ KQNLRRRLGL DFCEQFMDVS DVIKDEDLLA HKGSSSGIGS
0201: NNGYWVSRSG QNIQQLVATM VPSHRPKRLS ARELNLLKRK AKVYAKDQIK CSSEDDELGT KHPQNSLNSK GTWSDTSFSN KDLADTILDE DSSENDQNGR
0301: WPFHHYVEQL VHDIFDPIWE VRHGAMMALR EILTHHGSCA GVYFPDLSLE DSFVVASDEK IPIDSTKRVR DIDLNMQYSL SESEPELKKP KVENELCHSH
0401: DGIGCSDKQM EDGTYTSVDG CPSETNSTAV NNKVDISHVK VKLDPCTDGF SSELKREDDA PPKFVFENCN SVSKMGFLAN LPESSKVVKL IKLARHSWTK
0501: NWELLQDYAI RFLCVLSLDR FGDYVSDQVV APVRETCAQA LGAVLKYMQP LLVLDTLKIL LQMQCRQEWE VRHGSLLGIK YLVAVRPEMI VDLLDYVLPA
0601: CKAGLEDPDD DVRAVAAEAL IPTAAAITSL DDQILHSIVM LLWDILLDLD DLSPSTSSVM NLLAEIYSQP AMVPKMSREN PYMLSTLTPR LWPFMRHSIT
0701: SVRHSAIRTL VHISIHADLH YCLFVLPFFF FAVTGFYFNS FKCLNLMQER LLEVGFTRSS ESMATRFWPT SVLGDALRIV FQNMLLESND DILCSSERVW
0801: QLLLQCPEQD LEVAGKLYYL SWIQVATTPY GSALDASKLF WPVALPRKSQ FRAAKMKAIM LEGAVKENIT QDKSFDVSIS VPKIIIGADS EKSVIHTRVI
0901: TATSLGIFAS KMPEASLQVV IDSLWNDLIS SSGVQRQVAS MVFVAWFKEL KSRNTTEGVF VGLLDNVKQW LLDLLSCSDP SFPTKGSREP YAELSRTYTK
1001: MRNEASHLFH LVESIGIFKD YISSIKFNLK SLTVDEAINF ASNLSLPIES TVVENVEKHI VDDIESSKQQ LLSTSAYLKC VQNNLHVTVT ALVAAAVVWM
1101: SELPSKLNPI ILPLMAAVKR EQEEILQQKA AEALAELIFH CIGRKPSPND KLIKNLCSLT CADTSETPQA ATMNSLDVID DKNLFSFGKA ANVEKSKLHM
1201: LSSGEDKSIV EGFLSRRGSE MALKHLCEKF GASLFEKLPK IWDCITEVLK PASPGGGLIS TDDQRMANIS KDNDPQTLIN NIQLIRSIAP VLNDLLRPQL
1301: LTLLPSILWC VCHHHVAVRL AASRCITSMA KSMESSVMGA VIENVIPMLS DSSSVHARQG AGMLVHLLVQ GLGVVLVPYA PLLVVPLLRC MGDCDHAVRQ
1401: TVTHSFAALV PLLPLARGLP SPVGLSESLS RNAEDAQFLE QLLDNSHIDD YKLPIDLSVS LRRYQQEGIN WLAFLKRFKL HGILCDDMGL GKTLQASAIV
1501: ASDIVERRAS IDCKDLQSLI ICPSTLVGHW AYEIEKYIDN SIMITLQYVG STQARMLLRG QFDRCNVIIT SYDIVRKDID ILGKLAWNYC ILDEGHIIKN
1601: SKSKITNAVK QLKAEHRLIL SGTPIQNNVL ELWSLFDFLM PGFLGTERQF QTTYGKPLLA ARDPKCSAKD AEAGALAMEA LHKQVMPFLL RRTKDEVLHD
1701: LPEKIVQDRY CDLSPVQLKL YEHFSFSNAK KEISCLVKEH ESAETTASKA TSHVFQAMQY LLKLCSHPLL AIGEKPHDFF VSLLSEVIPG CTDFRRELHE
1801: LHHSPKLVAL QEILEECGIG LDASSCDDAL TVGQHRVLIF AQHKSFLDII EKDLFRSHMK SVTYLRLDGS VEPEKRYEIV KAFNSDPTID VLLLTTHVGG
1901: LGLNLTSADT LVFVEHDWNP MKDLQAMDRA HRLGQRKVVN VHRLIMRGTL EEKVMSLQKF KVTVANAVIN AENASLKTMN TDQLLDLFAS SPTIQMGTSA
2001: SNSSAGNTDK DPKLAVTGRG LKAILNGLGE LWDQSQYENE YNLNQFLEKL NG
0101: KDVGASVSDM CPNPTAGLSF KSFDINKVLE FGSPLLASGG QEFDVASDSS KSPAERLAHQ KQNLRRRLGL DFCEQFMDVS DVIKDEDLLA HKGSSSGIGS
0201: NNGYWVSRSG QNIQQLVATM VPSHRPKRLS ARELNLLKRK AKVYAKDQIK CSSEDDELGT KHPQNSLNSK GTWSDTSFSN KDLADTILDE DSSENDQNGR
0301: WPFHHYVEQL VHDIFDPIWE VRHGAMMALR EILTHHGSCA GVYFPDLSLE DSFVVASDEK IPIDSTKRVR DIDLNMQYSL SESEPELKKP KVENELCHSH
0401: DGIGCSDKQM EDGTYTSVDG CPSETNSTAV NNKVDISHVK VKLDPCTDGF SSELKREDDA PPKFVFENCN SVSKMGFLAN LPESSKVVKL IKLARHSWTK
0501: NWELLQDYAI RFLCVLSLDR FGDYVSDQVV APVRETCAQA LGAVLKYMQP LLVLDTLKIL LQMQCRQEWE VRHGSLLGIK YLVAVRPEMI VDLLDYVLPA
0601: CKAGLEDPDD DVRAVAAEAL IPTAAAITSL DDQILHSIVM LLWDILLDLD DLSPSTSSVM NLLAEIYSQP AMVPKMSREN PYMLSTLTPR LWPFMRHSIT
0701: SVRHSAIRTL VHISIHADLH YCLFVLPFFF FAVTGFYFNS FKCLNLMQER LLEVGFTRSS ESMATRFWPT SVLGDALRIV FQNMLLESND DILCSSERVW
0801: QLLLQCPEQD LEVAGKLYYL SWIQVATTPY GSALDASKLF WPVALPRKSQ FRAAKMKAIM LEGAVKENIT QDKSFDVSIS VPKIIIGADS EKSVIHTRVI
0901: TATSLGIFAS KMPEASLQVV IDSLWNDLIS SSGVQRQVAS MVFVAWFKEL KSRNTTEGVF VGLLDNVKQW LLDLLSCSDP SFPTKGSREP YAELSRTYTK
1001: MRNEASHLFH LVESIGIFKD YISSIKFNLK SLTVDEAINF ASNLSLPIES TVVENVEKHI VDDIESSKQQ LLSTSAYLKC VQNNLHVTVT ALVAAAVVWM
1101: SELPSKLNPI ILPLMAAVKR EQEEILQQKA AEALAELIFH CIGRKPSPND KLIKNLCSLT CADTSETPQA ATMNSLDVID DKNLFSFGKA ANVEKSKLHM
1201: LSSGEDKSIV EGFLSRRGSE MALKHLCEKF GASLFEKLPK IWDCITEVLK PASPGGGLIS TDDQRMANIS KDNDPQTLIN NIQLIRSIAP VLNDLLRPQL
1301: LTLLPSILWC VCHHHVAVRL AASRCITSMA KSMESSVMGA VIENVIPMLS DSSSVHARQG AGMLVHLLVQ GLGVVLVPYA PLLVVPLLRC MGDCDHAVRQ
1401: TVTHSFAALV PLLPLARGLP SPVGLSESLS RNAEDAQFLE QLLDNSHIDD YKLPIDLSVS LRRYQQEGIN WLAFLKRFKL HGILCDDMGL GKTLQASAIV
1501: ASDIVERRAS IDCKDLQSLI ICPSTLVGHW AYEIEKYIDN SIMITLQYVG STQARMLLRG QFDRCNVIIT SYDIVRKDID ILGKLAWNYC ILDEGHIIKN
1601: SKSKITNAVK QLKAEHRLIL SGTPIQNNVL ELWSLFDFLM PGFLGTERQF QTTYGKPLLA ARDPKCSAKD AEAGALAMEA LHKQVMPFLL RRTKDEVLHD
1701: LPEKIVQDRY CDLSPVQLKL YEHFSFSNAK KEISCLVKEH ESAETTASKA TSHVFQAMQY LLKLCSHPLL AIGEKPHDFF VSLLSEVIPG CTDFRRELHE
1801: LHHSPKLVAL QEILEECGIG LDASSCDDAL TVGQHRVLIF AQHKSFLDII EKDLFRSHMK SVTYLRLDGS VEPEKRYEIV KAFNSDPTID VLLLTTHVGG
1901: LGLNLTSADT LVFVEHDWNP MKDLQAMDRA HRLGQRKVVN VHRLIMRGTL EEKVMSLQKF KVTVANAVIN AENASLKTMN TDQLLDLFAS SPTIQMGTSA
2001: SNSSAGNTDK DPKLAVTGRG LKAILNGLGE LWDQSQYENE YNLNQFLEKL NG
0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
Arabidopsis Description
RGD3ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.