Factsheet for Os06t0255700-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	70.51	99.26
Os08t0289400-00	Rice	cytosol, nucleus	50.53	90.53
Os08t0243866-00	Rice	endoplasmic reticulum	47.36	69.35
TraesCS2B01G208700.1	Wheat	cytosol	66.91	69.1
KXG24379	Sorghum	cytosol	69.98	68.25
TraesCS2D01G189900.1	Wheat	nucleus	68.5	68.07
Zm00001d024677_P003	Maize	cytosol	67.97	67.68
Zm00001d049605_P037	Maize	cytosol	69.45	67.25
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	68.39	66.36
TraesCS5A01G340400.1	Wheat	nucleus	67.12	66.28
TraesCS5D01G344400.1	Wheat	nucleus	67.12	66.28
HORVU5Hr1G085320.1	Barley	plastid	67.02	65.03
TraesCS2A01G182200.1	Wheat	plastid	68.08	61.98
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	40.8	56.68
VIT_03s0038g04290.t01	Wine grape	nucleus	12.26	52.49
KRH27453	Soybean	cytosol	46.09	49.38
Bra021841.1-P	Field mustard	cytosol	37.42	46.34
Solyc01g109970.2.1	Tomato	extracellular	43.45	45.31
KRH20806	Soybean	cytosol	45.14	44.81
VIT_03s0038g00030.t01	Wine grape	nucleus	44.93	44.69
AT2G16390.2	Thale cress	nucleus	41.97	44.56
PGSC0003DMT400079488	Potato	nucleus	43.55	44.54
CDX89710	Canola	nucleus	39.22	42.94
GSMUA_Achr6P04530_001	Banana	nucleus	40.17	42.84
Os03t0165266-00	Rice	nucleus	41.12	36.22
Bra000888.1-P	Field mustard	cytosol	17.34	35.73
Os05t0392400-01	Rice	cytosol, nucleus	14.16	29.78
Os07t0692600-01	Rice	mitochondrion	14.8	29.47
Os02t0650800-00	Rice	cytosol	22.73	22.95
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	7.82	15.78
Os05t0247900-01	Rice	plastid	12.79	14.14
Os04t0692750-01	Rice	cytosol	13.85	13.27
Os01t0102800-01	Rice	cytosol, nucleus, plastid	12.79	13.2
Os02t0762800-00	Rice	nucleus	12.47	12.04
Os10t0457700-01	Rice	nucleus	16.6	11.9
Os02t0161200-01	Rice	nucleus	2.11	4.69
Os07t0692500-01	Rice	cytosol	2.22	3.69
Os02t0161300-01	Rice	extracellular	0.63	1.17
Os07t0692401-00	Rice	mitochondrion	0.11	0.21
Os04t0692700-01	Rice	nucleus	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:4340671	ProteinID:BAD45245.1
ProteinID:BAD46298.1	ProteinID:BAF19224.1	ProteinID:BAS97092.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EnsemblPlantsGene:Os06g0255700	EnsemblPlants:Os06t0255700-01	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807
UniProt:Q652G9	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI000043A221	RefSeq:XP_015643525.1	RefSeq:XP_015643526.1	RefSeq:XP_015643527.1	RefSeq:XP_015643528.1	SEG:seg

Description

DEAD-like helicase, N-terminal domain containing protein. (Os06t0255700-01)

Coordinates

chr6:+:8097302..8104472

Molecular Weight (calculated)

106983.0 Da

IEP (calculated)

6.234

GRAVY (calculated)

-0.436

Length

946 amino acids

Sequence
(BLAST)

001: MYYRRQRKAS SEANANVFMP GGPNDISFPA SNRDHDWGYG GVGKEWEASY ARKLQLMNFL SSLHQRTANP LVTTRMDANM DTPLEQKQKD SSAIIVLDSD
101: DEDGYTEGCE QLTSENNKQQ APSGLTSPYT TWIVSSAKDQ VNGTLHVDGV QSTQIVPYYG QNAPLINQFP LQTSWQPSIQ YERVILQKRP EEQRVQDLVA
201: ASHAEKIAET QVLLTLPTLP NERKRRKTEP TTLVDVDGGT NLGKRKRKNH QNQAAVDSNL DLQQNDVPSQ SYRTMIEEEK PVKESDGLED LWKDFSLAAE
301: CTKLDTNEDM SNEKDVDDEN EMDDDCNHDI RIHEDLGHVC RICGMIVRKA ETIIDYQWKK ASRTRTNYYE SRSKDADEID TGAVKVSEDF IVSDIAIHPR
401: HAKQMRPHQL EGFSFLVKNL VGDKPGGCIL AHAPGSGKTF MLISFIQSFL AKYPSARPLV VLPKGILGTW KREFQRWQVE DIPLYDFYSV KADKRVEQLE
501: VLKSWEAQMS ILFLGYKQFS RIICGDGDGN IAAACRDRLL MVPNLLILDE GHTPRNRETD VLASLKRVQT PRKVVLSGTL FQNHVSEVFN ILDLVRPKFL
601: KMESSRPIAR RIMSQVAISG IRSLKGVHDS AFTESVEDTL LNDDNFTRKA HVIRSLRELT KDVLHYYKGD ILDELPGLVD FSVFLKLSTK QKEIVHKIEA
701: YEKFKRSAVG TALYIHPCLS EISEGDAADR ASNLTDATVD SLIESIIIKD GVKAKFFFNI LSLANSAGEK LLAFSQYILP MKFLERLLVK RLGWHVGKEI
801: FMISGDTSAD DREVAMDQFN NSADAKVLFG SIKACGEGIS LVGASRVIIL DVHLNPSVTR QAIGRAFRPG QQKKVFVYRL VAADSPEVKF HETAFKKEVI
901: PKLWFEWSEL CTTEDFKLNQ VDIDDSEDEL LEANAIRQDI KALYRR

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.