Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g077650.1.1 | Tomato | cytosol | 3.52 | 63.46 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 59.77 | 53.03 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 59.23 | 52.51 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 59.34 | 52.4 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 24.01 | 50.0 |
| PGSC0003DMT400033315 | Potato | nucleus | 7.04 | 45.52 |
| Solyc08g077590.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 8.43 | 45.4 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 60.09 | 44.26 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 30.42 | 44.19 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 59.87 | 44.17 |
| Solyc08g077580.1.1 | Tomato | cytosol | 8.11 | 43.93 |
| CDX77430 | Canola | nucleus | 31.16 | 43.39 |
| CDY29038 | Canola | nucleus | 8.11 | 43.18 |
| CDY59589 | Canola | nucleus | 8.11 | 43.18 |
| KXG31163 | Sorghum | nucleus | 57.31 | 42.02 |
| Solyc04g054440.1.1 | Tomato | nucleus | 29.24 | 41.83 |
| Solyc01g068300.1.1 | Tomato | cytosol | 17.4 | 41.79 |
| Solyc01g068320.1.1 | Tomato | cytosol | 29.67 | 41.62 |
| Solyc08g061370.1.1 | Tomato | cytosol | 7.68 | 41.38 |
| Solyc08g077610.1.1 | Tomato | nucleus | 29.46 | 41.26 |
| PGSC0003DMT400096321 | Potato | nucleus | 5.44 | 40.8 |
| PGSC0003DMT400088837 | Potato | cytosol | 8.22 | 40.74 |
| PGSC0003DMT400017302 | Potato | nucleus | 27.0 | 40.61 |
| Solyc02g033050.1.1 | Tomato | nucleus | 27.21 | 40.54 |
| Zm00001d051324_P001 | Maize | nucleus | 57.84 | 40.54 |
| Solyc08g062000.1.1 | Tomato | cytosol | 16.86 | 40.41 |
| Solyc03g061640.1.1 | Tomato | cytosol | 7.15 | 40.36 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 2.99 | 39.44 |
| Solyc08g061410.1.1 | Tomato | cytosol | 18.46 | 39.41 |
| Solyc08g077690.2.1 | Tomato | nucleus | 29.99 | 37.92 |
| Solyc08g062060.1.1 | Tomato | nucleus | 4.27 | 37.74 |
| Solyc01g060460.1.1 | Tomato | nucleus | 30.52 | 37.58 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 9.28 | 35.51 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 9.07 | 35.27 |
| KRH39939 | Soybean | nucleus | 23.16 | 35.17 |
| Solyc08g061340.1.1 | Tomato | cytosol | 8.32 | 34.98 |
| Solyc08g061390.1.1 | Tomato | cytosol | 9.18 | 34.68 |
| Solyc08g061990.1.1 | Tomato | mitochondrion | 13.77 | 33.51 |
| PGSC0003DMT400004629 | Potato | nucleus | 31.38 | 32.96 |
| Solyc08g077670.1.1 | Tomato | cytosol | 15.58 | 32.23 |
| Solyc08g077600.1.1 | Tomato | cytosol | 13.45 | 32.06 |
| PGSC0003DMT400085993 | Potato | cytosol | 5.66 | 31.55 |
| CDX93009 | Canola | nucleus | 32.55 | 31.44 |
| CDX94823 | Canola | nucleus | 32.02 | 30.8 |
| Os07t0434500-01 | Rice | cytoskeleton, cytosol, nucleus | 21.99 | 30.65 |
| PGSC0003DMT400004673 | Potato | nucleus | 29.56 | 30.24 |
| CDY66441 | Canola | nucleus | 33.3 | 30.2 |
| Bra015035.1-P | Field mustard | nucleus | 33.3 | 29.94 |
| PGSC0003DMT400085944 | Potato | cytosol | 7.47 | 29.79 |
| Bra001944.1-P | Field mustard | nucleus | 33.19 | 29.17 |
| Solyc08g062070.1.1 | Tomato | cytosol | 4.06 | 28.57 |
| PGSC0003DMT400004672 | Potato | nucleus | 30.2 | 28.44 |
| Os07t0692600-01 | Rice | mitochondrion | 14.41 | 28.42 |
| KRH23851 | Soybean | mitochondrion, nucleus | 33.51 | 26.93 |
| PGSC0003DMT400037430 | Potato | nucleus | 18.89 | 26.34 |
| Os08t0243866-00 | Rice | endoplasmic reticulum | 18.04 | 26.16 |
| KRH46527 | Soybean | nucleus | 32.02 | 26.13 |
| AT3G24340.1 | Thale cress | nucleus | 31.38 | 25.97 |
| PGSC0003DMT400017313 | Potato | nucleus | 31.91 | 24.81 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 32.76 | 24.64 |
| CDY47279 | Canola | nucleus | 35.11 | 24.61 |
| CDY10115 | Canola | nucleus | 35.33 | 24.0 |
| PGSC0003DMT400038789 | Potato | nucleus | 28.28 | 23.96 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 35.11 | 23.33 |
| Os06t0255700-01 | Rice | cytosol | 22.95 | 22.73 |
| Bra015430.1-P | Field mustard | nucleus | 35.22 | 20.85 |
| Os03t0165266-00 | Rice | nucleus | 20.81 | 18.16 |
| Os08t0289400-00 | Rice | cytosol, nucleus | 10.03 | 17.8 |
| Os01t0636700-01 | Rice | cytoskeleton, cytosol, nucleus | 7.58 | 15.14 |
| Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 13.77 | 14.07 |
| Os05t0247900-01 | Rice | plastid | 12.27 | 13.43 |
| Os04t0692750-01 | Rice | cytosol | 13.98 | 13.27 |
| Os02t0762800-00 | Rice | nucleus | 13.45 | 12.86 |
| Os10t0457700-01 | Rice | nucleus | 16.76 | 11.9 |
| Os02t0161200-01 | Rice | nucleus | 1.81 | 3.99 |
| Os07t0692500-01 | Rice | cytosol | 2.24 | 3.69 |
| Os02t0161300-01 | Rice | extracellular | 1.6 | 2.94 |
| Os07t0692401-00 | Rice | mitochondrion | 0.11 | 0.21 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
| Os02t0762600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | UniProt:A0A0P0VMH4 | ProteinID:BAS80053.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | EnsemblPlantsGene:Os02g0650800 | EnsemblPlants:Os02t0650800-00 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF858 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000393BBB8 | SEG:seg |
Description
ATP-dependent helicase CTD2SNF2-related domain containing protein. (Os02t0650800-00)
Coordinates
chr2:+:26234414..26238290
Molecular Weight (calculated)
106794.0 Da
IEP (calculated)
8.500
GRAVY (calculated)
-0.515
Length
937 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMPLMGKRM FEGFSFLQQV DTSTGRDIRA RTRSNFKRKK LLDKKLLKRG TFAKPYCIDV SSSGSEEDVP QPEQSAYGGD CADDDGGSDG NEEHRAVKRR
101: KLNRRQSAHS DSEEDTTFVC DVKEGSGSRR VQEGAPRRQV KKEGSNKKKD GSTPQCVRNN GPKVGRQTNG LNGQGGVSFK RNVKIAQRRK RRQATADQEK
201: YGHLLDPMFN EIESNQYEPV PEEQIDRRLP LVFAFGDDDK LEEKSKHDKL QDEDELWKEF DFALESINVC SHNCEEGEKE DEQEIPADKA ASCIQGKHEL
301: IIDEQIGLRC KHCNFVDLEI RFVLPSMVKS CTERDMRKDH ELDLFFDDIL TSAGYEGPRD FGGKKTGLVW DLVPGVREDM FPHQQEGFEF MWRKLAGGTS
401: IEQLRNNANT IEGGCVISHA PGTGKTRLAI TFVQSYFAFF PECCPVIIAP RGMLATWEQE FRKWKVKVPF HVLNSKEINW KEDRTIKQLA IMDENLAQSL
501: ARNKLDHKFR RKLKLASWRK GSSIIGVSYT LFRKLANQSS MDGNMVRNLL LEMPDLLVLD EGHTPRNKKS LIWKVLEEVR TKKRIILSGT PFQNSFLELS
601: NVLYLIRPKF ARHFASKSFK KIGLEDYWTS LTLNNITEKK IDEIRQILDP IVHIHNGDIL QKSLPGLRES VVILNPLPHQ KEIITAMENT VTMGTLDAEY
701: KISLASIHPF LVTCAKLSEK ETSSVDVSLL KSLRPNPCVG VKTKFVLEIV RLCEAMKERV LVFSQYLEPL SLIMDQLSKM FNWIEGEEIL LMSGNVLVQN
801: REALMEAFND MKSNAKVMLA STKACCEGIT LIGASRVVLL DVVWNPSVGR QAIGRAYRIG QEKIVYTYNL ITEGTKEKDK YDRQAKKDHM SKLLFSKEPH
901: AAGFNLSQEV IFNDKILEAM TSHRELKDMF VKILHSH
101: KLNRRQSAHS DSEEDTTFVC DVKEGSGSRR VQEGAPRRQV KKEGSNKKKD GSTPQCVRNN GPKVGRQTNG LNGQGGVSFK RNVKIAQRRK RRQATADQEK
201: YGHLLDPMFN EIESNQYEPV PEEQIDRRLP LVFAFGDDDK LEEKSKHDKL QDEDELWKEF DFALESINVC SHNCEEGEKE DEQEIPADKA ASCIQGKHEL
301: IIDEQIGLRC KHCNFVDLEI RFVLPSMVKS CTERDMRKDH ELDLFFDDIL TSAGYEGPRD FGGKKTGLVW DLVPGVREDM FPHQQEGFEF MWRKLAGGTS
401: IEQLRNNANT IEGGCVISHA PGTGKTRLAI TFVQSYFAFF PECCPVIIAP RGMLATWEQE FRKWKVKVPF HVLNSKEINW KEDRTIKQLA IMDENLAQSL
501: ARNKLDHKFR RKLKLASWRK GSSIIGVSYT LFRKLANQSS MDGNMVRNLL LEMPDLLVLD EGHTPRNKKS LIWKVLEEVR TKKRIILSGT PFQNSFLELS
601: NVLYLIRPKF ARHFASKSFK KIGLEDYWTS LTLNNITEKK IDEIRQILDP IVHIHNGDIL QKSLPGLRES VVILNPLPHQ KEIITAMENT VTMGTLDAEY
701: KISLASIHPF LVTCAKLSEK ETSSVDVSLL KSLRPNPCVG VKTKFVLEIV RLCEAMKERV LVFSQYLEPL SLIMDQLSKM FNWIEGEEIL LMSGNVLVQN
801: REALMEAFND MKSNAKVMLA STKACCEGIT LIGASRVVLL DVVWNPSVGR QAIGRAYRIG QEKIVYTYNL ITEGTKEKDK YDRQAKKDHM SKLLFSKEPH
901: AAGFNLSQEV IFNDKILEAM TSHRELKDMF VKILHSH
0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
Arabidopsis Description
CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.