Factsheet for Solyc08g077590.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g061350.1.1	Tomato	mitochondrion	31.03	76.06
Solyc08g061340.1.1	Tomato	cytosol	70.69	55.16
Solyc03g061640.1.1	Tomato	cytosol	39.08	40.96
Solyc08g062070.1.1	Tomato	cytosol	30.46	39.85
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	54.02	39.0
Solyc08g062080.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	22.41	32.77
Solyc08g061370.1.1	Tomato	cytosol	30.46	30.46
Solyc08g062000.1.1	Tomato	cytosol	60.34	26.85
Solyc08g077610.1.1	Tomato	nucleus	94.83	24.66
Solyc08g061990.1.1	Tomato	mitochondrion	51.72	23.38
Solyc02g033050.1.1	Tomato	nucleus	83.91	23.21
Solyc08g077670.1.1	Tomato	cytosol	60.34	23.18
Solyc08g061410.1.1	Tomato	cytosol	57.47	22.78
Solyc08g077600.1.1	Tomato	cytosol	51.15	22.65
Solyc04g054440.1.1	Tomato	nucleus	80.46	21.37
Solyc08g061390.1.1	Tomato	cytosol	30.46	21.37
Solyc01g068320.1.1	Tomato	cytosol	78.74	20.51
Solyc08g077690.2.1	Tomato	nucleus	81.61	19.16
Solyc01g060460.1.1	Tomato	nucleus	79.31	18.13
VIT_02s0012g00110.t01	Wine grape	cytosol	55.75	15.04
Solyc01g068300.1.1	Tomato	cytosol	31.61	14.1
Solyc08g061420.1.1	Tomato	cytosol	6.9	13.48
PGSC0003DMT400004673	Potato	nucleus	70.11	13.32
Os05t0392400-01	Rice	cytosol, nucleus	28.74	11.11
KRH39939	Soybean	nucleus	32.76	9.24
Os02t0650800-00	Rice	cytosol	45.4	8.43
TraesCS3A01G220700.1	Wheat	nucleus	47.13	7.77
GSMUA_Achr7P06840_001	Banana	nucleus	41.95	7.74
TraesCS3B01G251000.1	Wheat	nucleus	46.55	7.63
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	16.09	7.59
TraesCS3A01G238800.1	Wheat	nucleus	45.98	7.57
KRH23851	Soybean	mitochondrion, nucleus	46.55	6.95
AT3G24340.1	Thale cress	nucleus	44.25	6.8
KRH46527	Soybean	nucleus	43.68	6.62
TraesCS3D01G231800.1	Wheat	nucleus	47.13	6.46
KRH46528	Soybean	cytosol, extracellular, nucleus	45.98	6.42
TraesCS2D01G053900.1	Wheat	nucleus	39.08	6.26
AT1G05490.1	Thale cress	mitochondrion, nucleus	50.57	6.24
Solyc01g109970.2.1	Tomato	extracellular	32.18	6.17
KXG31163	Sorghum	nucleus	44.83	6.1
TraesCS6A01G241100.1	Wheat	nucleus	39.66	6.06
TraesCS1D01G245400.1	Wheat	nucleus	48.28	5.66
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	48.28	5.64
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	48.28	5.63
OQU77943	Sorghum	mitochondrion	47.13	5.62
Solyc06g050510.2.1	Tomato	nucleus	33.91	4.58
Solyc07g053870.2.1	Tomato	plastid	20.11	3.95
Solyc04g050150.2.1	Tomato	nucleus	24.14	3.45
Solyc09g066480.2.1	Tomato	nucleus	21.26	3.05
Solyc01g068280.2.1	Tomato	nucleus	21.26	3.05
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	21.26	2.92
Solyc08g077580.1.1	Tomato	cytosol	1.15	1.16
Solyc04g050160.2.1	Tomato	nucleus	1.72	0.95
Solyc04g056410.2.1	Tomato	nucleus	0.57	0.17
Zm00001d047708_P001	Maize	cytosol	0.0	0.0
Os02t0161300-01	Rice	extracellular	0.0	0.0
Solyc08g077650.1.1	Tomato	cytosol	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0
Solyc08g074520.1.1	Tomato	nucleus	0.0	0.0
Solyc08g062060.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc08g077590.1.1	EnsemblPlantsGene:Solyc08g077590.1	Gene3D:3.40.50.10810	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	InterPro:SNF2-like_sf
InterPro:SNF2_N	PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	PFAM:PF00176	PFscan:PS51192	SUPFAM:SSF52540
UniParc:UPI000276C4A9	UniProt:K4CNB8	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr8:+:61555443..61555967

Molecular Weight (calculated)

20042.5 Da

IEP (calculated)

9.169

GRAVY (calculated)

-0.140

Length

174 amino acids

Sequence
(BLAST)

001: MFPKCRPVVI APSNLLLNWE AEFQKWAMDI PFHNLNSKNF FLKEDEGTVG VFHCLSGAAK KNLHLIWMVK LKSWAKSKSV LGINYDLFRI LIGEDVEGYN
101: KELREILLKF PSLLVLEEGH TARNEHSLVW KALKKVETEK RILLSGTPFQ NNIKELYNTL CVVSPKFAAD LEQK

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.