Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g050160.2.1 | Tomato | nucleus | 4.12 | 8.57 |
| Solyc04g056400.2.1 | Tomato | cytosol, nucleus, plastid | 2.59 | 4.61 |
| Solyc06g050510.2.1 | Tomato | nucleus | 4.42 | 2.25 |
| Solyc01g068280.2.1 | Tomato | nucleus | 4.12 | 2.22 |
| Solyc09g066480.2.1 | Tomato | nucleus | 3.96 | 2.14 |
| Solyc08g062060.1.1 | Tomato | nucleus | 0.3 | 1.89 |
| Solyc01g109970.2.1 | Tomato | extracellular | 1.98 | 1.43 |
| Solyc07g053870.2.1 | Tomato | plastid | 1.68 | 1.24 |
| Solyc08g077600.1.1 | Tomato | cytosol | 0.61 | 1.02 |
| Solyc08g061390.1.1 | Tomato | cytosol | 0.3 | 0.81 |
| Solyc04g050150.2.1 | Tomato | nucleus | 1.07 | 0.58 |
| Solyc08g074500.2.1 | Tomato | cytosol, nucleus, plastid | 0.61 | 0.32 |
| Solyc01g060460.1.1 | Tomato | nucleus | 0.15 | 0.13 |
| Solyc08g062070.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
| Solyc08g077690.2.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc08g077670.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g077650.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g077610.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc01g068300.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g077590.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 0.0 | 0.0 |
| Solyc08g077580.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc01g068320.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g062080.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 0.0 | 0.0 |
| Solyc04g056410.2.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc02g033050.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| Solyc08g062000.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g061990.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc08g061420.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g061410.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc03g061640.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g061370.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc08g061340.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc04g054440.1.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc08g074520.1.1 | EnsemblPlantsGene:Solyc08g074520.1 | Gene3D:1.25.10.10 | GO:GO:0003674 | GO:GO:0005488 | InterPro:ARM-like |
| InterPro:ARM-type_fold | InterPro:IPR011989 | ncoils:Coil | PANTHER:PTHR36498 | SEG:seg | SUPFAM:SSF48371 |
| UniParc:UPI000276B0DC | UniProt:K4CMH1 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr8:-:58619245..58630999
Molecular Weight (calculated)
72695.1 Da
IEP (calculated)
5.068
GRAVY (calculated)
-0.307
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAR QIGEIAKSHP QDLNSLLSKV SQYLRSKKWD TRVAAAHAIG SIAENVKHTT LAEHCSSVEV KMSEEGISGN
101: VEELVAWPNC YPKIGGTSFR SFDLNKVLEF GALLASAGQE YDIPMDNSKN SRERLARQKQ NLRRRLGLDV CEQFMDVNEM IRDEDLIMQR ANSPGNGVAA
201: QYYSSRPVGN IRQYVANMVP SVRSRRPSAR ELNLLKRKAK ISSKDQTKGW NKDGDTEAPQ AQDIISPRGM CPDMSSSNKL LGENISDEDG LEYDGDKIWP
301: FQSFVEQLIL DMFDPLWEVR HGSVMAMREI LTHQGANAGV IIPDLSCDSA LNIKIKERVN ENTVKRERPI DLNMQVPPDE LESVSKKLKV EPEDAAFLPM
401: DTMVCTSTDG DPGGVSVKVE DVGLSLAVDQ TNGEVSSGSV KFETQSHLSG GILGNDMSDE KRVGVDKTPM EKMGVLENLP ENCELMNLVR LARHSWLKNC
501: EFLQDCAIRF LCVLSLERFG DYVSDQVVAP VRETCAQALG AVLKYMHPTL VHETLNILLQ MQRRPEWEIR HGSLLGIKYL VAVRQEMLPE LLGCVLPACK
601: AGLEDPDDDV RAVAADALLP TAGSVVALNG QLLHSIIMLL WDILLDLDDL SPSTSR
101: VEELVAWPNC YPKIGGTSFR SFDLNKVLEF GALLASAGQE YDIPMDNSKN SRERLARQKQ NLRRRLGLDV CEQFMDVNEM IRDEDLIMQR ANSPGNGVAA
201: QYYSSRPVGN IRQYVANMVP SVRSRRPSAR ELNLLKRKAK ISSKDQTKGW NKDGDTEAPQ AQDIISPRGM CPDMSSSNKL LGENISDEDG LEYDGDKIWP
301: FQSFVEQLIL DMFDPLWEVR HGSVMAMREI LTHQGANAGV IIPDLSCDSA LNIKIKERVN ENTVKRERPI DLNMQVPPDE LESVSKKLKV EPEDAAFLPM
401: DTMVCTSTDG DPGGVSVKVE DVGLSLAVDQ TNGEVSSGSV KFETQSHLSG GILGNDMSDE KRVGVDKTPM EKMGVLENLP ENCELMNLVR LARHSWLKNC
501: EFLQDCAIRF LCVLSLERFG DYVSDQVVAP VRETCAQALG AVLKYMHPTL VHETLNILLQ MQRRPEWEIR HGSLLGIKYL VAVRQEMLPE LLGCVLPACK
601: AGLEDPDDDV RAVAADALLP TAGSVVALNG QLLHSIIMLL WDILLDLDDL SPSTSR
0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
Arabidopsis Description
RGD3ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.