Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061540 | Potato | nucleus | 97.2 | 97.28 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 53.15 | 53.9 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 46.54 | 49.71 |
| KRH73247 | Soybean | nucleus | 50.04 | 49.16 |
| AT3G42670.4 | Thale cress | nucleus | 47.09 | 48.17 |
| KRG97679 | Soybean | nucleus | 45.69 | 47.61 |
| CDY56857 | Canola | cytosol | 46.46 | 47.27 |
| CDX92463 | Canola | nucleus | 46.39 | 47.19 |
| AT5G20420.1 | Thale cress | cytosol | 46.23 | 47.18 |
| Bra021058.1-P | Field mustard | nucleus | 46.15 | 46.73 |
| Bra002302.1-P | Field mustard | cytosol | 45.14 | 46.63 |
| Solyc08g077650.1.1 | Tomato | cytosol | 1.71 | 42.31 |
| Solyc08g061420.1.1 | Tomato | cytosol | 2.8 | 40.45 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 33.33 | 39.72 |
| Solyc08g062080.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 3.34 | 36.13 |
| KXG37026 | Sorghum | nucleus | 33.64 | 35.2 |
| Solyc03g061640.1.1 | Tomato | cytosol | 4.51 | 34.94 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 33.72 | 34.61 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 33.72 | 34.55 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 33.72 | 34.34 |
| TraesCS2A01G089500.1 | Wheat | plastid | 33.57 | 34.26 |
| Solyc08g077580.1.1 | Tomato | cytosol | 4.58 | 34.1 |
| Solyc08g062060.1.1 | Tomato | nucleus | 2.8 | 33.96 |
| Solyc08g077590.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 4.58 | 33.91 |
| Solyc04g054440.1.1 | Tomato | nucleus | 16.71 | 32.82 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 33.57 | 32.38 |
| Solyc08g061370.1.1 | Tomato | cytosol | 4.27 | 31.61 |
| Solyc08g061390.1.1 | Tomato | cytosol | 6.06 | 31.45 |
| Solyc01g068300.1.1 | Tomato | cytosol | 9.48 | 31.28 |
| Solyc08g077610.1.1 | Tomato | nucleus | 16.16 | 31.09 |
| Solyc02g033050.1.1 | Tomato | nucleus | 15.15 | 31.0 |
| Solyc01g068320.1.1 | Tomato | cytosol | 16.01 | 30.84 |
| Solyc08g062000.1.1 | Tomato | cytosol | 9.32 | 30.69 |
| Solyc08g061410.1.1 | Tomato | cytosol | 10.18 | 29.84 |
| Solyc08g077690.2.1 | Tomato | nucleus | 16.63 | 28.88 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 1.55 | 28.17 |
| Solyc08g077600.1.1 | Tomato | cytosol | 8.47 | 27.74 |
| Solyc01g060460.1.1 | Tomato | nucleus | 16.24 | 27.46 |
| Solyc08g062070.1.1 | Tomato | cytosol | 2.8 | 27.07 |
| Solyc08g061990.1.1 | Tomato | mitochondrion | 7.85 | 26.23 |
| Solyc08g061340.1.1 | Tomato | cytosol | 4.51 | 26.01 |
| Solyc08g077670.1.1 | Tomato | cytosol | 8.94 | 25.39 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 4.35 | 23.24 |
| Solyc01g109970.2.1 | Tomato | extracellular | 15.77 | 22.38 |
| Solyc04g056400.2.1 | Tomato | cytosol, nucleus, plastid | 4.35 | 15.18 |
| Os04t0692750-01 | Rice | cytosol | 10.8 | 14.08 |
| Solyc07g053870.2.1 | Tomato | plastid | 8.94 | 12.97 |
| Solyc04g050150.2.1 | Tomato | nucleus | 11.42 | 12.08 |
| Solyc04g056410.2.1 | Tomato | nucleus | 5.44 | 11.93 |
| Solyc09g066480.2.1 | Tomato | nucleus | 10.88 | 11.54 |
| Solyc01g068280.2.1 | Tomato | nucleus | 10.88 | 11.52 |
| Solyc08g074500.2.1 | Tomato | cytosol, nucleus, plastid | 9.09 | 9.23 |
| Solyc04g050160.2.1 | Tomato | nucleus | 1.32 | 5.4 |
| Solyc08g074520.1.1 | Tomato | nucleus | 2.25 | 4.42 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| UniProt:K4C5J5 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc06g050510.2 | EnsemblPlants:Solyc06g050510.2.1 | UniParc:UPI0002766B1C | SEG:seg | : |
Description
No Description!
Coordinates
chr6:-:33193879..33200786
Molecular Weight (calculated)
146778.0 Da
IEP (calculated)
8.530
GRAVY (calculated)
-0.441
Length
1287 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRHIHYNAH PIDPHPFEAF WYGSWQAVER LRINMGTITT HVLVDGEVIE ENIPVTNLRM RSRKATLSDC ACFLRPGLEV CVLSIPYQGE NSGDEKDVKP
0101: VWIDGKIRSI ERKPHELTCT CKFHVSVYVT QGPPPILKKT LSKEIKMLPI DQIAVLQKLE PKPCENKRYR WSSSEDCNSL QTFKLFIGKF SSDLTWLMTA
0201: SVLKEATFDV RSIHNQIVYE IVDDDLVRKE TNSNQHSYSV NFKLEGGVQT TTVIQFNRDI PDINSTSDLS ESGPLVLYDL MGPRRSKRRF VQPERYYGCD
0301: DDMAEFDVEM TRLVGGRRKV EYEELPLALS IQADHAYRTG EIEEISSSYK RELFGGNIRS HEKRSSESSS GWRNALKSDV NKLADKKSVT ADRQHQLAIV
0401: PLHPPSGTGL TVHEQVPLDV DVPEHLSAEI GEIVSRYIHF NSSSTSHDRK ASKMNFTKPE ARRWGQVKIS KLKFMGLDRR GGTLGSHKKY KRNTTKKDSI
0501: YDIRSFKKGS VAANVYKELI RRCMANIDAT LNKEQPPIID QWKEFQSTKS SQRESGDHLA MNRDEEVSEI DMLWKEMELA LASCYLLDDS EDSHAQYASN
0601: VRIGAEIRGE VCRHDYRLNE EIGIICRLCG FVSTEIKDVP PPFMPSSNHN SSKEQRTEEA TDHKQDDDGL DTLSIPVSSR APSSSGGGEG NVWALIPDLG
0701: NKLRVHQKRA FEFLWKNIAG SIVPAEMQPE SKERGGCVIS HTPGAGKTLL IISFLVSYLK LFPGSRPLVL APKTTLYTWY KEVLKWKIPV PVYQIHGGQT
0801: FKGEVLREKV KLCPGLPRNQ DVMHVLDCLE KMQMWLSQPS VLLMGYTSFL TLTREDSPYA HRKYMAQVLR QCPGLLILDE GHNPRSTKSR LRKGLMKVNT
0901: RLRILLSGTL FQNNFGEYFN TLTLARPTFV DEVLKELDPK YKNKNKGASR FSLENRARKM FIDKISTVID SDIPKKRKEG LNILKKLTGG FIDVHDGGTS
1001: DNLPGLQCYT LMMKSTTLQQ EILVKLQNQR PIYKGFPLEL ELLITLGAIH PWLIRTTACS SQYFKEEELE ALQKFKFDLK LGSKVKFVMS LIPRCLLRRE
1101: KVLIFCHNIA PINLFLEIFE RFYGWRKGIE VLVLQGDIEL FQRGRIMDLF EEPGGPSKVM LASITTCAEG ISLTAASRVI LLDSEWNPSK SKQAIARAFR
1201: PGQDKVVYVY QLLATGTLEE EKYKRTTWKE WVSSMIFSED LVEDPSHWQA PKIEDELLRE IVEEDRATLF HAIMKNEKAS NMGSLQE
0101: VWIDGKIRSI ERKPHELTCT CKFHVSVYVT QGPPPILKKT LSKEIKMLPI DQIAVLQKLE PKPCENKRYR WSSSEDCNSL QTFKLFIGKF SSDLTWLMTA
0201: SVLKEATFDV RSIHNQIVYE IVDDDLVRKE TNSNQHSYSV NFKLEGGVQT TTVIQFNRDI PDINSTSDLS ESGPLVLYDL MGPRRSKRRF VQPERYYGCD
0301: DDMAEFDVEM TRLVGGRRKV EYEELPLALS IQADHAYRTG EIEEISSSYK RELFGGNIRS HEKRSSESSS GWRNALKSDV NKLADKKSVT ADRQHQLAIV
0401: PLHPPSGTGL TVHEQVPLDV DVPEHLSAEI GEIVSRYIHF NSSSTSHDRK ASKMNFTKPE ARRWGQVKIS KLKFMGLDRR GGTLGSHKKY KRNTTKKDSI
0501: YDIRSFKKGS VAANVYKELI RRCMANIDAT LNKEQPPIID QWKEFQSTKS SQRESGDHLA MNRDEEVSEI DMLWKEMELA LASCYLLDDS EDSHAQYASN
0601: VRIGAEIRGE VCRHDYRLNE EIGIICRLCG FVSTEIKDVP PPFMPSSNHN SSKEQRTEEA TDHKQDDDGL DTLSIPVSSR APSSSGGGEG NVWALIPDLG
0701: NKLRVHQKRA FEFLWKNIAG SIVPAEMQPE SKERGGCVIS HTPGAGKTLL IISFLVSYLK LFPGSRPLVL APKTTLYTWY KEVLKWKIPV PVYQIHGGQT
0801: FKGEVLREKV KLCPGLPRNQ DVMHVLDCLE KMQMWLSQPS VLLMGYTSFL TLTREDSPYA HRKYMAQVLR QCPGLLILDE GHNPRSTKSR LRKGLMKVNT
0901: RLRILLSGTL FQNNFGEYFN TLTLARPTFV DEVLKELDPK YKNKNKGASR FSLENRARKM FIDKISTVID SDIPKKRKEG LNILKKLTGG FIDVHDGGTS
1001: DNLPGLQCYT LMMKSTTLQQ EILVKLQNQR PIYKGFPLEL ELLITLGAIH PWLIRTTACS SQYFKEEELE ALQKFKFDLK LGSKVKFVMS LIPRCLLRRE
1101: KVLIFCHNIA PINLFLEIFE RFYGWRKGIE VLVLQGDIEL FQRGRIMDLF EEPGGPSKVM LASITTCAEG ISLTAASRVI LLDSEWNPSK SKQAIARAFR
1201: PGQDKVVYVY QLLATGTLEE EKYKRTTWKE WVSSMIFSED LVEDPSHWQA PKIEDELLRE IVEEDRATLF HAIMKNEKAS NMGSLQE
0001: MKKRGFYNLK HPFDPCPFEF FCSGTWKPVE YMRIEDGMMT IRLLENGYVL EDIRPFQRLR LRSRKAALSD CICFLRPDID VCVLYRIHED DLEPVWVDAR
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
Arabidopsis Description
CLSY2SNF2 domain-containing protein CLASSY 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K493]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.