Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92463 | Canola | nucleus | 83.03 | 82.77 |
| CDY56857 | Canola | cytosol | 82.16 | 81.9 |
| Bra002302.1-P | Field mustard | cytosol | 80.89 | 81.86 |
| AT3G42670.4 | Thale cress | nucleus | 74.07 | 74.24 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 50.36 | 52.7 |
| KRH73247 | Soybean | nucleus | 53.45 | 51.45 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 49.96 | 49.65 |
| KRG97679 | Soybean | nucleus | 47.5 | 48.5 |
| Solyc06g050510.2.1 | Tomato | nucleus | 47.18 | 46.23 |
| PGSC0003DMT400061540 | Potato | nucleus | 46.95 | 46.03 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 32.28 | 37.69 |
| KXG37026 | Sorghum | nucleus | 32.83 | 33.66 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 33.15 | 33.07 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 32.67 | 32.85 |
| TraesCS2A01G089500.1 | Wheat | plastid | 32.43 | 32.43 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 32.28 | 32.4 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 32.75 | 30.96 |
| AT2G21450.2 | Thale cress | nucleus | 16.18 | 24.79 |
| AT2G16390.2 | Thale cress | nucleus | 16.89 | 23.91 |
| AT3G32330.1 | Thale cress | cytosol | 6.19 | 23.85 |
| AT3G24340.1 | Thale cress | nucleus | 19.35 | 21.55 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 19.75 | 17.66 |
| AT3G31900.1 | Thale cress | cytosol | 4.92 | 15.78 |
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 5.55 | 14.77 |
| AT1G03750.1 | Thale cress | plastid | 9.75 | 14.27 |
| Os04t0692750-01 | Rice | cytosol | 10.47 | 13.37 |
| AT3G19210.1 | Thale cress | nucleus | 9.6 | 13.3 |
| AT2G18760.3 | Thale cress | nucleus | 11.82 | 11.96 |
| AT5G63950.1 | Thale cress | cytosol | 9.91 | 11.47 |
| AT1G08600.3 | Thale cress | nucleus | 12.45 | 10.62 |
| AT3G54280.2 | Thale cress | mitochondrion | 11.74 | 6.95 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:832164 | ProteinID:AED92841.1 | EMBL:AF296833 |
| ArrayExpress:AT5G20420 | EnsemblPlantsGene:AT5G20420 | RefSeq:AT5G20420 | TAIR:AT5G20420 | RefSeq:AT5G20420-TAIR-G | EnsemblPlants:AT5G20420.1 |
| TAIR:AT5G20420.1 | Unigene:At.31185 | Symbol:CHR42 | UniProt:F4K493 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | RefSeq:NP_197542.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009046 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0000162532 |
| SEG:seg | : | : | : | : | : |
Description
CLSY2SNF2 domain-containing protein CLASSY 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K493]
Coordinates
chr5:-:6898790..6904242
Molecular Weight (calculated)
145322.0 Da
IEP (calculated)
7.404
GRAVY (calculated)
-0.468
Length
1261 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKKRGFYNLK HPFDPCPFEF FCSGTWKPVE YMRIEDGMMT IRLLENGYVL EDIRPFQRLR LRSRKAALSD CICFLRPDID VCVLYRIHED DLEPVWVDAR
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.