Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 77.86 | 64.56 |
| AT3G32330.1 | Thale cress | cytosol | 43.51 | 52.29 |
| AT2G16390.2 | Thale cress | nucleus | 26.72 | 11.78 |
| AT2G21450.2 | Thale cress | nucleus | 21.88 | 10.45 |
| AT3G24340.1 | Thale cress | nucleus | 15.01 | 5.21 |
| AT3G42670.4 | Thale cress | nucleus | 15.78 | 4.93 |
| AT5G20420.1 | Thale cress | cytosol | 15.78 | 4.92 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 15.78 | 4.4 |
| AT1G03750.1 | Thale cress | plastid | 8.65 | 3.94 |
| AT3G19210.1 | Thale cress | nucleus | 7.89 | 3.41 |
| AT5G63950.1 | Thale cress | cytosol | 9.41 | 3.39 |
| AT1G08600.3 | Thale cress | nucleus | 11.7 | 3.11 |
| AT2G18760.3 | Thale cress | nucleus | 9.16 | 2.89 |
| AT3G54280.2 | Thale cress | mitochondrion | 9.67 | 1.78 |
Protein Annotations
| Gene3D:3.40.50.10810 | MapMan:35.1 | EntrezGene:822923 | ProteinID:AEE77676.1 | ArrayExpress:AT3G31900 | EnsemblPlantsGene:AT3G31900 |
| RefSeq:AT3G31900 | TAIR:AT3G31900 | RefSeq:AT3G31900-TAIR-G | EnsemblPlants:AT3G31900.1 | TAIR:AT3G31900.1 | Unigene:At.53619 |
| UniProt:F4J923 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0008150 | GO:GO:0016787 | InterPro:IPR038718 | RefSeq:NP_189731.1 | InterPro:P-loop_NTPase |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF807 | InterPro:SNF2-like_sf | SUPFAM:SSF52540 | UniParc:UPI0000163644 | SEG:seg |
Description
ATP-dependent helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4J923]
Coordinates
chr3:+:12875071..12877422
Molecular Weight (calculated)
44272.3 Da
IEP (calculated)
8.278
GRAVY (calculated)
-0.271
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKRKFSQE KDLYQNDDKR KKVVALENQE TGGSCVDGNV AHWFSKTKFN GLVDVPIVYL ALEENVVKND LTLRSSLKHV IIGSISGGSN SGKGLAKDLY
101: LDVNELVEVQ VRSDKEINMM KDKGKAIFDL NEAIWPKDEP ISNTFEKSRA TLTNCEHSWI WKQGFGDMCY HLQGSSVATG FRSNICKDIK MRVPKDSFSG
201: TGIFPHPLHK MIMKPHHFEI LNFLCKNLVV ENSNGCIIDQ TPLSEKTFLM ISFIYVGVER LEKKFGELKV NDLVLLDFYS TKASAKQFSN IVSDNSGAEA
301: SDSCRDILLN ILSVVVFGRG TDPRNEMMSF LKVVSRIKTP HKVLLTGSLY QNNIKEVFNI LDVAFPEFLK HNQIGKNFRK FLNVEADGPS TNL
101: LDVNELVEVQ VRSDKEINMM KDKGKAIFDL NEAIWPKDEP ISNTFEKSRA TLTNCEHSWI WKQGFGDMCY HLQGSSVATG FRSNICKDIK MRVPKDSFSG
201: TGIFPHPLHK MIMKPHHFEI LNFLCKNLVV ENSNGCIIDQ TPLSEKTFLM ISFIYVGVER LEKKFGELKV NDLVLLDFYS TKASAKQFSN IVSDNSGAEA
301: SDSCRDILLN ILSVVVFGRG TDPRNEMMSF LKVVSRIKTP HKVLLTGSLY QNNIKEVFNI LDVAFPEFLK HNQIGKNFRK FLNVEADGPS TNL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.