Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024192.1-P | Field mustard | nucleus | 81.14 | 87.08 |
| CDX92882 | Canola | nucleus | 78.89 | 87.07 |
| CDY51705 | Canola | nucleus | 80.82 | 86.89 |
| KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 18.22 | 82.25 |
| Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 50.96 | 69.25 |
| VIT_07s0005g03670.t01 | Wine grape | nucleus | 65.73 | 66.75 |
| KRH19578 | Soybean | nucleus | 64.13 | 65.22 |
| PGSC0003DMT400026641 | Potato | nucleus | 63.24 | 64.96 |
| GSMUA_AchrUn_... | Banana | cytosol | 57.38 | 64.59 |
| Solyc09g066480.2.1 | Tomato | nucleus | 62.52 | 64.22 |
| EES02658 | Sorghum | nucleus | 61.64 | 63.58 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 59.71 | 60.98 |
| TraesCS3D01G082200.2 | Wheat | nucleus | 59.39 | 60.61 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 59.87 | 60.45 |
| Zm00001d040203_P003 | Maize | cytosol | 60.43 | 59.9 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 59.47 | 58.03 |
| AT1G03750.1 | Thale cress | plastid | 17.74 | 25.64 |
| AT5G63950.1 | Thale cress | cytosol | 20.47 | 23.39 |
| AT3G19210.1 | Thale cress | nucleus | 14.77 | 20.22 |
| AT1G08600.3 | Thale cress | nucleus | 17.82 | 15.01 |
| AT2G21450.2 | Thale cress | nucleus | 9.55 | 14.46 |
| AT3G32330.1 | Thale cress | cytosol | 3.37 | 12.84 |
| AT2G16390.2 | Thale cress | nucleus | 9.15 | 12.79 |
| AT5G20420.1 | Thale cress | cytosol | 11.96 | 11.82 |
| AT3G24340.1 | Thale cress | nucleus | 10.67 | 11.75 |
| AT3G42670.4 | Thale cress | nucleus | 11.64 | 11.53 |
| AT3G54280.2 | Thale cress | mitochondrion | 18.54 | 10.85 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 10.91 | 9.65 |
| AT3G31900.1 | Thale cress | cytosol | 2.89 | 9.16 |
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 3.05 | 8.02 |
Protein Annotations
| MapMan:12.4.1.4.3 | MapMan:14.6.2.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:816391 | UniProt:A0A1P8AZA4 |
| ProteinID:ANM61953.1 | ArrayExpress:AT2G18760 | EnsemblPlantsGene:AT2G18760 | RefSeq:AT2G18760 | TAIR:AT2G18760 | RefSeq:AT2G18760-TAIR-G |
| EnsemblPlants:AT2G18760.3 | Unigene:At.39947 | Symbol:CHR8 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | RefSeq:NP_001324142.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF837 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000849499E | SEG:seg | : | : |
Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
Coordinates
chr2:+:8128706..8134401
Molecular Weight (calculated)
140231.0 Da
IEP (calculated)
6.978
GRAVY (calculated)
-0.602
Length
1246 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSDK AVILDLPDVE ISHVINAMLL SDKSQQFLPM LSKFFFFPHL SLCKPTSYDV DSCCNVSGDG
0401: RRILTTSSCE EEELDDFDDA DDNERSSVQL EGGLNIPECI FRKLFDYQRV GVQWLWELHC QRAGGIIGDE MGLGKTIQVL SFLGSLHFSK MYKPSIIICP
0501: VTLLRQWRRE AQKWYPDFHV EILHDSAQDS GHGKGQGKAS ESDYDSESSV DSDHEPKSKN TKKWDSLLNR VLNSESGLLI TTYEQLRLQG EKLLNIEWGY
0601: AVLDEGHRIR NPNSDITLVC KQLQTVHRII MTGAPIQNKL TELWSLFDFV FPGKLGVLPV FEAEFSVPIT VGGYANASPL QVSTAYRCAV VLRDLIMPYL
0701: LRRMKADVNA HLTKKTEHVL FCSLTVEQRS TYRAFLASSE VEQIFDGNRN SLYGIDVMRK ICNHPDLLER EHSHQNPDYG NPERSGKMKV VAEVLKVWKQ
0801: QGHRVLLFSQ TQQMLDILES FLVANEYSYR RMDGLTPVKQ RMALIDEFNN SEDMFVFVLT TKVGGLGTNL TGANRVIIFD PDWNPSNDMQ ARERAWRIGQ
0901: KKDVTVYRLI TRGTIEEKVY HRQIYKHFLT NKILKNPQQR RFFKARDMKD LFILKDDGDS NASTETSNIF SQLAEEINIV GVQSDKKPES DTQLALHKTA
1001: EGSSEQTDVE MTDKTGEAMD EETNILKSLF DAHGIHSAVN HDAIMNANDE EEKMRLEHQA SQVAQRAAEA LRQSRMLRSR ESISVPTWTG RSGCAGAPSS
1101: VRRRFGSTVN SRLTQTGDKP SAIKNGISAG LSSGKAPSSA ELLNRIRGSR EQAIGVGLEQ PQSSFPSSSG SSSRVGSLQP EVLIRKICSF VQQKGGSADT
1201: TSIVNHFRDI VSFNDKQLFK NLLKEIATLE KDQNRSFWVL KSEYKD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSDK AVILDLPDVE ISHVINAMLL SDKSQQFLPM LSKFFFFPHL SLCKPTSYDV DSCCNVSGDG
0401: RRILTTSSCE EEELDDFDDA DDNERSSVQL EGGLNIPECI FRKLFDYQRV GVQWLWELHC QRAGGIIGDE MGLGKTIQVL SFLGSLHFSK MYKPSIIICP
0501: VTLLRQWRRE AQKWYPDFHV EILHDSAQDS GHGKGQGKAS ESDYDSESSV DSDHEPKSKN TKKWDSLLNR VLNSESGLLI TTYEQLRLQG EKLLNIEWGY
0601: AVLDEGHRIR NPNSDITLVC KQLQTVHRII MTGAPIQNKL TELWSLFDFV FPGKLGVLPV FEAEFSVPIT VGGYANASPL QVSTAYRCAV VLRDLIMPYL
0701: LRRMKADVNA HLTKKTEHVL FCSLTVEQRS TYRAFLASSE VEQIFDGNRN SLYGIDVMRK ICNHPDLLER EHSHQNPDYG NPERSGKMKV VAEVLKVWKQ
0801: QGHRVLLFSQ TQQMLDILES FLVANEYSYR RMDGLTPVKQ RMALIDEFNN SEDMFVFVLT TKVGGLGTNL TGANRVIIFD PDWNPSNDMQ ARERAWRIGQ
0901: KKDVTVYRLI TRGTIEEKVY HRQIYKHFLT NKILKNPQQR RFFKARDMKD LFILKDDGDS NASTETSNIF SQLAEEINIV GVQSDKKPES DTQLALHKTA
1001: EGSSEQTDVE MTDKTGEAMD EETNILKSLF DAHGIHSAVN HDAIMNANDE EEKMRLEHQA SQVAQRAAEA LRQSRMLRSR ESISVPTWTG RSGCAGAPSS
1101: VRRRFGSTVN SRLTQTGDKP SAIKNGISAG LSSGKAPSSA ELLNRIRGSR EQAIGVGLEQ PQSSFPSSSG SSSRVGSLQP EVLIRKICSF VQQKGGSADT
1201: TSIVNHFRDI VSFNDKQLFK NLLKEIATLE KDQNRSFWVL KSEYKD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.