Factsheet for Os01t0102800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32203	Soybean	cytosol, mitochondrion, nucleus	25.52	84.78
EES02658	Sorghum	nucleus	87.9	66.72
TraesCS3D01G082200.2	Wheat	nucleus	85.39	64.13
HORVU3Hr1G014660.2	Barley	nucleus	85.17	64.02
TraesCS3A01G081900.1	Wheat	nucleus	85.71	63.7
Zm00001d040203_P003	Maize	cytosol	86.04	62.77
TraesCS3B01G097000.1	Wheat	nucleus	85.39	61.32
CDX92882	Canola	nucleus	66.96	54.38
CDY51705	Canola	nucleus	68.7	54.36
Bra024192.1-P	Field mustard	nucleus	68.7	54.26
PGSC0003DMT400026641	Potato	nucleus	70.99	53.67
GSMUA_AchrUn_...	Banana	cytosol	64.67	53.57
Solyc09g066480.2.1	Tomato	nucleus	70.23	53.09
VIT_07s0005g03670.t01	Wine grape	nucleus	70.88	52.97
KRH19578	Soybean	nucleus	70.56	52.82
AT2G18760.3	Thale cress	nucleus	69.25	50.96
Os04t0692750-01	Rice	cytosol	24.32	22.59
Os05t0392400-01	Rice	cytosol, nucleus	10.91	22.22
Os05t0247900-01	Rice	plastid	20.39	21.85
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	10.8	21.11
Os07t0692600-01	Rice	mitochondrion	9.6	18.53
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	13.2	18.01
Os02t0762800-00	Rice	nucleus	19.19	17.96
Os08t0243866-00	Rice	endoplasmic reticulum	10.91	15.48
Os02t0650800-00	Rice	cytosol	14.07	13.77
Os10t0457700-01	Rice	nucleus	19.08	13.27
Os06t0255700-01	Rice	cytosol	13.2	12.79
Os03t0165266-00	Rice	nucleus	12.0	10.24
Os08t0289400-00	Rice	cytosol, nucleus	4.36	7.58
Os02t0161200-01	Rice	nucleus	2.94	6.34
Os02t0161300-01	Rice	extracellular	0.55	0.98
Os07t0692500-01	Rice	cytosol	0.44	0.7
Os04t0692700-01	Rice	nucleus	0.44	0.51
Os07t0692401-00	Rice	mitochondrion	0.11	0.21
Os02t0762600-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:12.4.1.4.3	MapMan:14.6.2.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0006974	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EnsemblPlantsGene:Os01g0102800
EnsemblPlants:Os01t0102800-01	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF837	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	UniParc:UPI000393A433	SEG:seg	:	:	:

Description

Cockayne syndrome WD-repeat proteinSimilar to chromatin remodeling complex subunit. (Os01t0102800-01)

Coordinates

chr1:+:152853..156449

Molecular Weight (calculated)

102356.0 Da

IEP (calculated)

7.776

GRAVY (calculated)

-0.523

Length

917 amino acids

Sequence
(BLAST)

001: KLDAPAAPFQ RLGKPLKRPV SPSSDEQEKK RPRNKTKRPL PGKKWRKANS IKESSLDDND VGEAAVSVSD DDEDQVTEGS DELTDVTLEG GLRIPGTLYT
101: QLFDYQKVGV QWLWELHCQR AGGIIGDEMG LGKTVQVLSF LGSLHNSGLY KPSIVVCPVT LLQQWRREAS RWYPKFKVEI LHDSANSSSK KSKRSSDSDS
201: EASWDSDQEE AVTCSKPAKK WDDLISRVVS SGSGLLLTTY EQLRILGEKL LDIEWGYAVL DEGHRIRNPN AEITLVCKQL QTVHRIIMTG APIQNKLSEL
301: WSLFDFVFPG KLGVLPVFEA EFSVPITVGG YANATPLQVS TAYRCAVVLR DLVMPYLLRR MKADVNAQLP KKTEHVLFCS LTTEQRATYR AFLASSEVEQ
401: IFDGNRNSLY GIDVLRKICN HPDLLEREHA AQNPDYGNPE RSGKMKVVEQ VLKVWKEQGH RVLLFTQTQQ MLDIMENFLT ACEYQYRRMD GLTPAKQRMA
501: LIDEFNNTDE IFIFILTTKV GGLGTNLTGA NRIIIYDPDW NPSTDMQARE RAWRIGQTRD VTVYRLITRG TIEEKVYHRQ IYKHFLTNKV LKDPQQRRFF
601: KARDMKDLFT LQDDDNNGST ETSNIFSQLS EDVNIGVPSD KQQDQLYAAS ATPTTSGTEP SSSRHGQGKE DHCPDQADEE CNILKSLFDA QGIHSAINHD
701: AIMNANDDQK LRLEAEATQV AQRAAEALRQ SRMLRSHESF SVPTWTGRAG AAGAPSSVRR KFGSTLNTQL VNSSQPSETS NGRGQSLQVG ALNGKALSSA
801: ELLARIRGTR EGAASDALEH QLNLGSASNH TSSSSGNGRA SSSSTRSMIV QPEVLIRQLC TFIQQHGGSA SSTSITEHFK NRILSKDMLL FKNLLKEIAT
901: LQRGANGATW VLKPDYQ

Best Arabidopsis Sequence Match ( AT2G18760.4 )
(BLAST)

0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD

Arabidopsis Description

CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.