Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G014660.2 | Barley | nucleus | 96.48 | 96.56 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 97.38 | 96.35 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 97.79 | 93.5 |
| Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 64.13 | 85.39 |
| KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 18.84 | 83.33 |
| EES02658 | Sorghum | nucleus | 80.59 | 81.46 |
| Zm00001d040203_P003 | Maize | cytosol | 79.85 | 77.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 59.46 | 65.58 |
| CDX92882 | Canola | nucleus | 59.05 | 63.86 |
| Bra024192.1-P | Field mustard | nucleus | 60.44 | 63.57 |
| CDY51705 | Canola | nucleus | 60.28 | 63.5 |
| VIT_07s0005g03670.t01 | Wine grape | nucleus | 62.57 | 62.27 |
| PGSC0003DMT400026641 | Potato | nucleus | 61.1 | 61.5 |
| Solyc09g066480.2.1 | Tomato | nucleus | 60.52 | 60.92 |
| KRH19578 | Soybean | nucleus | 61.02 | 60.82 |
| AT2G18760.3 | Thale cress | nucleus | 60.61 | 59.39 |
| TraesCS1D01G263000.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 16.95 | 30.85 |
| TraesCS6D01G107800.1 | Wheat | endoplasmic reticulum | 7.78 | 29.05 |
| TraesCS2D01G568400.1 | Wheat | cytosol | 19.25 | 24.61 |
| TraesCS7D01G144700.1 | Wheat | cytosol | 13.35 | 24.4 |
| TraesCS2D01G202400.1 | Wheat | plastid | 17.04 | 23.99 |
| TraesCS6D01G300900.1 | Wheat | cytosol | 16.05 | 18.51 |
| TraesCS1D01G143000.1 | Wheat | nucleus | 18.59 | 15.2 |
| TraesCS2D01G189900.1 | Wheat | nucleus | 10.24 | 13.13 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 13.43 | 12.91 |
| TraesCS5D01G344400.1 | Wheat | nucleus | 9.99 | 12.73 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 11.22 | 12.62 |
| TraesCS4D01G279200.1 | Wheat | cytosol | 9.75 | 12.51 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 11.3 | 10.99 |
| TraesCS1D01G450200.1 | Wheat | mitochondrion | 18.18 | 10.73 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 12.94 | 10.64 |
| TraesCS2D01G143100.1 | Wheat | cytosol | 4.26 | 8.39 |
Protein Annotations
| MapMan:12.4.1.4.3 | MapMan:14.6.2.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF837 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3D01G082200 | EnsemblPlants:TraesCS3D01G082200.2 | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:41671840..41676252
Molecular Weight (calculated)
135226.0 Da
IEP (calculated)
8.473
GRAVY (calculated)
-0.619
Length
1221 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEEDDDQRL LHSLGVTSAN IDDIERKILS QAKTDPKKGD AETPGPTATG DQESSLTTPQ DDAQAKLHQK LRSVQLEIDA VASTLGGAKQ AAGKKSGGGG
0101: SGCADAEDKK KKKKEKVKEE ENADEDAPRG GALQQALAAE RLRSLKRAKV QIQREILQSG PGPSGSGNQK DKMLAMLVED EPRRKKSLKP PGGPKKKSPT
0201: RRLKTVTYDD DDDFDTVLDG ASAGFMETER EELIRKGLLT PFHKLKGFEK RVERPGTSSR QNGSAEQAEE TMEASSIAKV AQAMQNMAQS RPTTKLLDAE
0301: FLPKLEAPTA PFQRLGVPLK RHGLPSSDER KNKRLKSKTK RPLPGKKWMK ANSKKETLLD VADEDVGDAA ASASVSENED EVIEGSDGLP PVILEGGLRI
0401: PGSVYTQLFD YQKVGVQWLW ELHCQRAGGI IGDEMGLGKT VQVLSFLGAL HDSGMYKPSI VICPVTLLQQ WRREASKWYP KFKVEILHDS ANSSSKKGKR
0501: YSDSESDVSW DSDQEEVTRM KPAQKWDDLI SRVVNSGSGL LLTTYEQLRI IREKLLDVEW GYAVLDEGHR IRNPNAEVTL VCKQLQTVHR IIMTGAPIQN
0601: KLSELWSLFD FVFPGKLGVL PVFETEFSVP ITVGGYANAT PLQVSTAYRC AVVLRDLIMP YLLRRMKADV NAQLPKKTEQ VLFCSLTQEQ RATYRAFLAS
0701: SEVEQIFDGN RNSLYGIDVL RKICNHPDLL EREQAAQNPD YGNIERSGKM KVVEQVLKVW KDQGHRVLLF AQTQQMLDIL ENFLTARDYQ YRRMDGLTPP
0801: KQRMALIDEF NNTDEIFIFI LTTKVGGLGT NLTGANRVII FDPDWNPSTD MQARERAWRI GQKRDVTVYR LITRGTIEEK VYHRQIYKHF LTNKVLKNPQ
0901: QRRFFKARDM KDLFTLQDDD KNGSTETSNI FGQLSEDVNI GAPDGEERGE RSSALPTSAE AEPSVDGDGK SDLRSDQADE ESNILKSLFD GQGVHSAINH
1001: DAIMSANDDQ KLRLEAEASQ VAQRAAEALR QSRMLRSRDD FAVPTWTGRA GAAGAPTSVR RKFGSTLNTQ LVSSSQPSEG SSSSSRVQSL QVGALHGKAL
1101: SSAELLAKMR GTREGAASDA LEHQLSLGST SNQRPGSTEN GRTSNSSSSR NMIVQPEVLI RQLCTFIQQN GGSASSTSLT EHFKNRIQPK DMLVFKNLLK
1201: EIATLQRGAG GATWVLKPEY G
0101: SGCADAEDKK KKKKEKVKEE ENADEDAPRG GALQQALAAE RLRSLKRAKV QIQREILQSG PGPSGSGNQK DKMLAMLVED EPRRKKSLKP PGGPKKKSPT
0201: RRLKTVTYDD DDDFDTVLDG ASAGFMETER EELIRKGLLT PFHKLKGFEK RVERPGTSSR QNGSAEQAEE TMEASSIAKV AQAMQNMAQS RPTTKLLDAE
0301: FLPKLEAPTA PFQRLGVPLK RHGLPSSDER KNKRLKSKTK RPLPGKKWMK ANSKKETLLD VADEDVGDAA ASASVSENED EVIEGSDGLP PVILEGGLRI
0401: PGSVYTQLFD YQKVGVQWLW ELHCQRAGGI IGDEMGLGKT VQVLSFLGAL HDSGMYKPSI VICPVTLLQQ WRREASKWYP KFKVEILHDS ANSSSKKGKR
0501: YSDSESDVSW DSDQEEVTRM KPAQKWDDLI SRVVNSGSGL LLTTYEQLRI IREKLLDVEW GYAVLDEGHR IRNPNAEVTL VCKQLQTVHR IIMTGAPIQN
0601: KLSELWSLFD FVFPGKLGVL PVFETEFSVP ITVGGYANAT PLQVSTAYRC AVVLRDLIMP YLLRRMKADV NAQLPKKTEQ VLFCSLTQEQ RATYRAFLAS
0701: SEVEQIFDGN RNSLYGIDVL RKICNHPDLL EREQAAQNPD YGNIERSGKM KVVEQVLKVW KDQGHRVLLF AQTQQMLDIL ENFLTARDYQ YRRMDGLTPP
0801: KQRMALIDEF NNTDEIFIFI LTTKVGGLGT NLTGANRVII FDPDWNPSTD MQARERAWRI GQKRDVTVYR LITRGTIEEK VYHRQIYKHF LTNKVLKNPQ
0901: QRRFFKARDM KDLFTLQDDD KNGSTETSNI FGQLSEDVNI GAPDGEERGE RSSALPTSAE AEPSVDGDGK SDLRSDQADE ESNILKSLFD GQGVHSAINH
1001: DAIMSANDDQ KLRLEAEASQ VAQRAAEALR QSRMLRSRDD FAVPTWTGRA GAAGAPTSVR RKFGSTLNTQ LVSSSQPSEG SSSSSRVQSL QVGALHGKAL
1101: SSAELLAKMR GTREGAASDA LEHQLSLGST SNQRPGSTEN GRTSNSSSSR NMIVQPEVLI RQLCTFIQQN GGSASSTSLT EHFKNRIQPK DMLVFKNLLK
1201: EIATLQRGAG GATWVLKPEY G
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
Arabidopsis Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.