Factsheet for TraesCS2D01G143100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G140400.2	Wheat	cytosol	93.55	60.67
TraesCS2B01G164300.3	Wheat	nucleus	93.23	60.46
TraesCS4D01G279200.1	Wheat	cytosol	78.71	51.31
VIT_03s0038g04290.t01	Wine grape	nucleus	15.81	44.34
EER92800	Sorghum	nucleus, plastid	55.32	36.3
Os03t0165266-00	Rice	nucleus	60.16	34.73
Bra000888.1-P	Field mustard	cytosol	25.32	34.2
KRH27453	Soybean	cytosol	34.68	24.35
Bra021841.1-P	Field mustard	cytosol	28.87	23.43
AT2G16390.2	Thale cress	nucleus	33.55	23.34
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	25.16	22.91
TraesCS2D01G189900.1	Wheat	nucleus	34.52	22.48
TraesCS5D01G344400.1	Wheat	nucleus	34.68	22.44
PGSC0003DMT400079488	Potato	nucleus	33.39	22.38
KRH20806	Soybean	cytosol	34.35	22.35
Solyc01g109970.2.1	Tomato	extracellular	32.58	22.27
VIT_03s0038g00030.t01	Wine grape	nucleus	33.87	22.08
CDX89710	Canola	nucleus	29.52	21.18
GSMUA_Achr6P04530_001	Banana	nucleus	30.16	21.08
TraesCS2D01G053900.1	Wheat	nucleus	16.77	9.58
TraesCS2D01G087600.1	Wheat	nucleus	19.35	9.55
TraesCS3D01G231800.1	Wheat	nucleus	19.19	9.37
TraesCS6D01G107800.1	Wheat	endoplasmic reticulum	4.84	9.17
TraesCS1D01G263000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	8.23	7.6
TraesCS7D01G144700.1	Wheat	cytosol	7.74	7.19
TraesCS2D01G568400.1	Wheat	cytosol	10.48	6.81
TraesCS1D01G245400.1	Wheat	nucleus	15.97	6.67
TraesCS2D01G202400.1	Wheat	plastid	8.87	6.34
TraesCS1D01G143000.1	Wheat	nucleus	14.68	6.1
TraesCS6D01G300900.1	Wheat	cytosol	9.19	5.38
TraesCS3D01G082200.2	Wheat	nucleus	8.39	4.26
TraesCS1D01G450200.1	Wheat	mitochondrion	11.61	3.48
HORVU2Hr1G024970.1	Barley	nucleus	1.45	2.75

Protein Annotations

Gene3D:3.40.50.10810	MapMan:35.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176
PFscan:PS51192	PANTHER:PTHR10799	PANTHER:PTHR10799:SF799	SMART:SM00487	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2D01G143100	EnsemblPlants:TraesCS2D01G143100.1	TIGR:cd00046	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:84760378..84763899

Molecular Weight (calculated)

69662.9 Da

IEP (calculated)

4.740

GRAVY (calculated)

-0.599

Length

620 amino acids

Sequence
(BLAST)

001: MDPSSCKRQK HDTGHDSSPG TQSPSSIISH NRSVRLRFLE RFDELKYGSA TEDYKAIERK KHQLISTLEK LQQVPIKLPC ASTALETSDA GLHGAAQSGK
101: NISSDNIVDL DQYDVGDHTH GNMDNTEAQK MVILLDSDDE DMVKSFGDGN LSGSKQNADF TQDCMPAEQP CQDQDIIMPN DENINSEAQL VVDPGKDSMG
201: INNEPKEIAL SDGHDTSEPQ QLNKQGHDDI DIYNESRDEE EETKEGEGED VQIKGCMENN SISDVDSYEI SCEVIQSESM AKGNYNHIDT IDNPVDELDD
301: LWKEMSVALA MSKTIGSDHS IVPSEKNSSE VVDDCHHDFV MKDDLGIVCR VCGLIQQRIE NIFELQWKKR NRSYRTYPQE PRNCNNLEAA TNPSGDILQV
401: APGTLSIHPQ HSERMKPHQV EGFNFLIKNL ADENNPGGCI LAHAPGSGKT FMLISFVQSF LARYPAGRPL IILPKGILAT WRTEFVRWQI KDMPIPLYDF
501: YSCKADSRSE QLNVLNLWEE KRSILLLGYQ QFACIVSDQT YKAEAVMCQE KLLKVPSLVI LDEGHTPRNE QTDLLNALGS IRTHRKVVLS GTLFQNHVKE
601: VFNILNLVRP KFLKRSDLVR

Best Arabidopsis Sequence Match ( AT2G16390.1 )
(BLAST)

001: MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM LEALDSGKFG SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN
101: QQVVEGVINL DDDDDDDTDV EKKALCVVPS SSEIVLLDSD DEDNERQRPM YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD LGRGKEMPSA IKAIVEGQTS
201: RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI WNEMALSIEC SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV
301: QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM KPHQIEGFQF LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ
401: AKPLVVLPKG ILPTWKKEFV RWQVEDIPLL DFYSAKAENR AQQLSILKQW MEKKSILFLG YQQFSTIVCD DTTDSLSCQE ILLKVPSILI LDEGHTPRNE
501: DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP KFLKLDTSKS AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ
601: DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK FKVSAVGSAI YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL
701: NLINLCDSAG EKLLVFSQYL IPLKFLERLA ALAKGWKLGK EVFVLTGNTS SEQREWSMET FNSSPDAKIF FGSIKACGEG ISLVGASRIL ILDVPLNPSV
801: TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE VISKMWFEWN EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.