Factsheet for TraesCS2A01G140400.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G164300.3	Wheat	nucleus	97.7	97.7
TraesCS2D01G143100.1	Wheat	cytosol	60.67	93.55
HORVU2Hr1G024970.1	Barley	nucleus	30.65	89.6
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	78.87	75.7
EER92800	Sorghum	nucleus, plastid	60.04	60.74
Os03t0165266-00	Rice	nucleus	64.33	57.26
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	36.72	51.54
VIT_03s0038g04290.t01	Wine grape	nucleus	10.98	47.51
Bra021841.1-P	Field mustard	cytosol	36.61	45.81
KRH27453	Soybean	cytosol	41.53	44.96
AT2G16390.2	Thale cress	nucleus	40.06	42.99
Solyc01g109970.2.1	Tomato	extracellular	39.54	41.68
PGSC0003DMT400079488	Potato	nucleus	39.85	41.19
KRH20806	Soybean	cytosol	41.0	41.13
VIT_03s0038g00030.t01	Wine grape	nucleus	40.69	40.9
CDX89710	Canola	nucleus	36.82	40.74
TraesCS5A01G340400.1	Wheat	nucleus	40.48	40.4
TraesCS2A01G182200.1	Wheat	plastid	41.32	38.02
GSMUA_Achr6P04530_001	Banana	nucleus	34.0	36.64
Bra000888.1-P	Field mustard	cytosol	17.47	36.38
TraesCS3A01G220700.1	Wheat	nucleus	22.28	20.17
TraesCS3A01G238800.1	Wheat	nucleus	21.97	19.87
TraesCS3A01G015600.1	Wheat	endoplasmic reticulum, golgi	11.61	18.38
TraesCS2A01G089500.1	Wheat	plastid	23.54	17.84
TraesCS6A01G241100.1	Wheat	nucleus	20.71	17.38
TraesCS2A01G185300.1	Wheat	plastid	14.02	15.46
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	20.5	13.16
TraesCS2A01G561600.1	Wheat	mitochondrion	13.81	12.35
TraesCS6A01G321200.1	Wheat	nucleus	12.24	12.02
TraesCS1A01G144000.3	Wheat	nucleus	17.05	10.87
TraesCS3A01G081900.1	Wheat	nucleus	12.66	9.81
TraesCS1A01G442400.2	Wheat	mitochondrion	12.87	5.94

Protein Annotations

MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF799	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS2A01G140400	EnsemblPlants:TraesCS2A01G140400.2	TIGR:cd00046	TIGR:cd00079
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:85595557..85600170

Molecular Weight (calculated)

107820.0 Da

IEP (calculated)

5.077

GRAVY (calculated)

-0.507

Length

956 amino acids

Sequence
(BLAST)

001: MDPSSCKRQK HDTGHDSTPG TQSPSSIISH NRSVRLRFLE RFDELKYGSA TEDYKAIERK KHQLISTLEK LQQVPIKLPC ASAALETSDA GLHGAAQSGK
101: NISSDNIVDL DQYDVEDNTH GNMDNTEAQK TVILLDSDDE DMVKSFGDGN LSGSKQNADF TQDCMPAEQP CQDQDIIMRN DENINSEALV VDPGKRSMGI
201: DNEPKEIALF DGHDTSEPQQ LNKQGHDHIN IHNESRDEEK ETREGEGEDV QSKGHMENNN ISAVDSYEIS CEVIQSESME EGNYNHIDTI DNPVDELDDL
301: WKDMSVALAM SKTIGSDHSI VPSEKNSSEV VDDCHHDFVM KDDLGIVCRV CGLIQQRIEN IFELQWKKRN RSYRTYPQEP RNCNDLEATT NPSGDILQVA
401: PGTLSIHPQH SERMKPHQVE GFNFLIKNLA DENNPGGCIL AHAPGSGKTF MLISFVQSFL ARYPAGRPLI ILPKGILATW RTEFVRWQIK DMPIPLYDFY
501: SSKADSRSEQ LDVLNLWEEN RSILLLGYQQ FACIVSDQTN KAEAVMCQEK LLKVPSLVIL DEGHTPRNEQ TDLLNALGSI RTPRKVVLSG TLFQNHVKEV
601: FNILNLVRPK FLKTERSRGI VKRVLSKVDM LGKNARSRNI SDKFCDLVEE NLQKDANDKM RAMIIESLRE LTANVLHYYQ GELSEELPGL LDLTVFLKMS
701: TEQEEVLRGL VGLGKFSKSA KCSAVSLHPC LKDIQNIKDK NRDIVVEKIG SIMRGIDIKV GAKSKFIYNL LCLSEAAGEK VLVFSRYVRF LIFLEMLIVR
801: EKGWVPEMHI FSMTGESTPD QRDKAVERFN QSPDAKVFFG SIKACGEGIS LVGASRVVIL DVHENPSVMR QAIGRAFRPG QTKMVYCYRL VAADSPEEED
901: HNTAFRKEWV SKMWFESNDL CGNDDFELAT VDVSESGDRF LDNEALRQDI KSLYKR

Best Arabidopsis Sequence Match ( AT2G16390.1 )
(BLAST)

001: MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM LEALDSGKFG SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN
101: QQVVEGVINL DDDDDDDTDV EKKALCVVPS SSEIVLLDSD DEDNERQRPM YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD LGRGKEMPSA IKAIVEGQTS
201: RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI WNEMALSIEC SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV
301: QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM KPHQIEGFQF LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ
401: AKPLVVLPKG ILPTWKKEFV RWQVEDIPLL DFYSAKAENR AQQLSILKQW MEKKSILFLG YQQFSTIVCD DTTDSLSCQE ILLKVPSILI LDEGHTPRNE
501: DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP KFLKLDTSKS AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ
601: DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK FKVSAVGSAI YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL
701: NLINLCDSAG EKLLVFSQYL IPLKFLERLA ALAKGWKLGK EVFVLTGNTS SEQREWSMET FNSSPDAKIF FGSIKACGEG ISLVGASRIL ILDVPLNPSV
801: TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE VISKMWFEWN EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.