Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G021360.1 | Barley | cytosol, mitochondrion, nucleus | 23.51 | 63.11 |
| HORVU6Hr1G021370.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 24.83 | 62.5 |
| TraesCS7D01G144700.1 | Wheat | cytosol | 67.22 | 60.78 |
| KRH59600 | Soybean | cytosol, nucleus, plastid | 58.11 | 44.77 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 72.19 | 40.79 |
| KXG27526 | Sorghum | cytosol | 70.03 | 40.29 |
| Zm00001d002950_P002 | Maize | nucleus | 67.72 | 37.73 |
| VIT_04s0044g01680.t01 | Wine grape | cytosol | 60.1 | 34.8 |
| KRH40956 | Soybean | nucleus | 58.94 | 34.56 |
| AT5G63950.1 | Thale cress | cytosol | 57.45 | 31.83 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.62 | 29.84 |
| Bra024250.1-P | Field mustard | cytosol | 56.62 | 29.66 |
| CDY43772 | Canola | mitochondrion | 56.13 | 29.22 |
| Solyc01g068280.2.1 | Tomato | nucleus | 56.95 | 28.31 |
| GSMUA_Achr7P23270_001 | Banana | nucleus | 64.07 | 27.18 |
| Os01t0636700-01 | Rice | cytoskeleton, cytosol, nucleus | 19.54 | 25.16 |
| TraesCS2A01G185300.1 | Wheat | plastid | 25.83 | 17.99 |
| TraesCS6A01G321200.1 | Wheat | nucleus | 26.32 | 16.34 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 32.78 | 16.05 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 18.54 | 11.69 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 18.38 | 11.61 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 18.54 | 11.24 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 26.82 | 10.81 |
| TraesCS2A01G182200.1 | Wheat | plastid | 18.38 | 10.68 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 17.05 | 9.75 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 16.72 | 9.56 |
| TraesCS2A01G089500.1 | Wheat | plastid | 18.38 | 8.8 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 16.39 | 8.69 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 25.99 | 7.59 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 17.72 | 7.19 |
Protein Annotations
| MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF756 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| EnsemblPlantsGene:TraesCS3A01G015600 | EnsemblPlants:TraesCS3A01G015600.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:10340218..10350824
Molecular Weight (calculated)
69877.2 Da
IEP (calculated)
7.116
GRAVY (calculated)
-0.374
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MLYPFQLQGL RWLWFLHCRG TGGILGDDMG LGKTIQVSAF LAGLFHSGLI RRVLVVVPKT LVTHWIRELT LVDLESNIRD CSCPDVNVRK SELQYAFKEG
101: GVLLTTYDIV WKYYNTIRGD FYHDVGDDEE GNLWNYVVLD EAHLIKNPKT QRFQRISEIP CVHRIAISGT PIQNNLEEMW ALFYFCCPEV LGDRDEFRER
201: YENYINRGNE KDATNPEKHI GSNVAKELRE LIKPYFLRRM KDEVYFATSL TNENTLPKKN ELIIWLKLTD YQRKLYEGFL NSHIFNKMRP RLLDITILKN
301: ICDHPDPLIL KKVAAEGTLE GMEDMDGKLN GHDMARLKNM ALNVAGYDDD ALQVGQLEVS CKLSFIMSLL KNLLEEGHHV LIFSQTRKML NIVQEAISLK
401: GYRFFRIDGT TKISARERIV KGFQEDFGTQ IFLLTTKVGG LGLTLTKADR VIVVGPDWNP SIDNQSVDRA YRIGQTKDVI VYRLMTAGTI EEKIYRTQIF
501: KWGLFRTATE QKEQTRYFNQ RDIQELLSLP AQGFDVSSTQ KQLQTEHEQQ LDMDESLREH LDFLEQQGIA GVSHHSLLFS KTEVLPTLNE NDHAPARKRR
601: RKPF
101: GVLLTTYDIV WKYYNTIRGD FYHDVGDDEE GNLWNYVVLD EAHLIKNPKT QRFQRISEIP CVHRIAISGT PIQNNLEEMW ALFYFCCPEV LGDRDEFRER
201: YENYINRGNE KDATNPEKHI GSNVAKELRE LIKPYFLRRM KDEVYFATSL TNENTLPKKN ELIIWLKLTD YQRKLYEGFL NSHIFNKMRP RLLDITILKN
301: ICDHPDPLIL KKVAAEGTLE GMEDMDGKLN GHDMARLKNM ALNVAGYDDD ALQVGQLEVS CKLSFIMSLL KNLLEEGHHV LIFSQTRKML NIVQEAISLK
401: GYRFFRIDGT TKISARERIV KGFQEDFGTQ IFLLTTKVGG LGLTLTKADR VIVVGPDWNP SIDNQSVDRA YRIGQTKDVI VYRLMTAGTI EEKIYRTQIF
501: KWGLFRTATE QKEQTRYFNQ RDIQELLSLP AQGFDVSSTQ KQLQTEHEQQ LDMDESLREH LDFLEQQGIA GVSHHSLLFS KTEVLPTLNE NDHAPARKRR
601: RKPF
0001: MAENTASHRR KPRSLNDRHY SILQDLSAPP RQPPSSSHGE DEETKKSMIK LAGRRRLCKA LPKEDEADGY DDPDLVDFYS PVKGETSLDS AGIGNKFTSW
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL
Arabidopsis Description
CHR24Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.