Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G222000.1 | Wheat | plastid | 98.04 | 98.04 |
| TraesCS2D01G202400.1 | Wheat | plastid | 97.92 | 97.92 |
| HORVU2Hr1G037590.4 | Barley | plastid | 97.12 | 96.01 |
| Os05t0247900-01 | Rice | plastid | 79.24 | 80.26 |
| Zm00001d013828_P002 | Maize | plastid | 80.39 | 79.29 |
| EER91354 | Sorghum | plastid | 80.62 | 78.72 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 65.51 | 65.36 |
| KRH25617 | Soybean | nucleus | 63.09 | 62.87 |
| VIT_12s0028g03440.t01 | Wine grape | plastid | 63.09 | 62.59 |
| AT1G03750.1 | Thale cress | plastid | 59.75 | 60.09 |
| PGSC0003DMT400082782 | Potato | plastid | 61.02 | 59.57 |
| Solyc07g053870.2.1 | Tomato | plastid | 60.67 | 59.3 |
| CDY37413 | Canola | mitochondrion, nucleus | 59.63 | 32.27 |
| CDY32510 | Canola | mitochondrion, nucleus | 59.63 | 32.19 |
| Bra032544.1-P | Field mustard | nucleus | 59.75 | 31.53 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 17.99 | 25.83 |
| TraesCS6A01G321200.1 | Wheat | nucleus | 21.22 | 18.91 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 23.99 | 16.86 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 20.07 | 16.28 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 15.46 | 14.02 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 15.46 | 13.45 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 14.3 | 12.94 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 21.68 | 12.54 |
| TraesCS2A01G182200.1 | Wheat | plastid | 14.76 | 12.32 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 13.26 | 10.89 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 13.03 | 10.69 |
| TraesCS2A01G089500.1 | Wheat | plastid | 14.53 | 9.99 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 12.92 | 9.83 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 21.22 | 8.89 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 13.84 | 8.06 |
Protein Annotations
| MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF804 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS2A01G185300 | EnsemblPlants:TraesCS2A01G185300.1 | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:146079725..146086264
Molecular Weight (calculated)
98194.7 Da
IEP (calculated)
8.430
GRAVY (calculated)
-0.515
Length
867 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLNRLKETL LPCSSSSGQS QSQPRSPSPP RPPRRPPKTS LSQQLLRLEA SYSLPAPPPS PPKPLSQKAA EDAAEQPTSS SEEDVAPRLR RRPAPPPAAS
101: FEPRGPYEPL VLSPPGEHPV VQVPPSINCR LLAHQRDGVR FLYNLYRNNH GGVLGDDMGL GKTIQTIAFL SSVIGKDNNQ GEKSTDKGKK SSPVLILCPT
201: SVIRNWENEF SEWANFSVAV YHGPNRDLVL EKIEGQGLEV LITSFDTFRT RDKVLCDISW ELVVVDEAHR LKNEKSKLYT ACLGITTRKR FGLTGTIMQN
301: KIMELFNVFD WVVPGCLGDR EHFREYYDEP LKHGQRLSAP ERFVQVADKR KKHLVSVLKK FLLRRTKEET IGHLMLGKED NIVFCRMSDV QKRVYRRMLQ
401: QPDIQILVNK DLPCSCGSPL TQVECCKKIE PRGIIWSYLH RENLDGCPLC PFCLVLPCLV KLQQISNHLE LIKPNPRDEI EKQKKDAELA AAVFDTDIEL
501: VGGSAKSENF MGLSDSEHCG KMRALERLLS LWTLQGDKIL LFSYSVRMLD ILEKFLIRKG YCFSRLDGST PMNARQSLVD EFNKSPSKQV FLISTRAGNL
601: GVNLVSANRV VIFDPSWNPA QDLQAQDRSF RFGQKRHVTV FRLLGAGSLE ELIYSRQIYK QQLSNIAVSG KIEKRYFDGV QDDKKFQGEL FGICNLFRDL
701: SDKLFTSEII EMHGEDEKAK TSEETGIREI VDTDLFGTQG QMKSSTAAIG DENQALADYG VVYAHRNEDV VNTRTHDDDN NERNDGATEE CVERISEDLH
801: SKKQIKPTAD RAKLRSVEEQ KRKEFSRIAA CVGMNDLEFS KWLLLVSPLQ RQRVLDDHRK KRSITKT
101: FEPRGPYEPL VLSPPGEHPV VQVPPSINCR LLAHQRDGVR FLYNLYRNNH GGVLGDDMGL GKTIQTIAFL SSVIGKDNNQ GEKSTDKGKK SSPVLILCPT
201: SVIRNWENEF SEWANFSVAV YHGPNRDLVL EKIEGQGLEV LITSFDTFRT RDKVLCDISW ELVVVDEAHR LKNEKSKLYT ACLGITTRKR FGLTGTIMQN
301: KIMELFNVFD WVVPGCLGDR EHFREYYDEP LKHGQRLSAP ERFVQVADKR KKHLVSVLKK FLLRRTKEET IGHLMLGKED NIVFCRMSDV QKRVYRRMLQ
401: QPDIQILVNK DLPCSCGSPL TQVECCKKIE PRGIIWSYLH RENLDGCPLC PFCLVLPCLV KLQQISNHLE LIKPNPRDEI EKQKKDAELA AAVFDTDIEL
501: VGGSAKSENF MGLSDSEHCG KMRALERLLS LWTLQGDKIL LFSYSVRMLD ILEKFLIRKG YCFSRLDGST PMNARQSLVD EFNKSPSKQV FLISTRAGNL
601: GVNLVSANRV VIFDPSWNPA QDLQAQDRSF RFGQKRHVTV FRLLGAGSLE ELIYSRQIYK QQLSNIAVSG KIEKRYFDGV QDDKKFQGEL FGICNLFRDL
701: SDKLFTSEII EMHGEDEKAK TSEETGIREI VDTDLFGTQG QMKSSTAAIG DENQALADYG VVYAHRNEDV VNTRTHDDDN NERNDGATEE CVERISEDLH
801: SKKQIKPTAD RAKLRSVEEQ KRKEFSRIAA CVGMNDLEFS KWLLLVSPLQ RQRVLDDHRK KRSITKT
001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
Arabidopsis Description
SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.