Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G185300.1 | Wheat | plastid | 98.04 | 98.04 |
| TraesCS2D01G202400.1 | Wheat | plastid | 96.77 | 96.77 |
| HORVU2Hr1G037590.4 | Barley | plastid | 96.89 | 95.78 |
| Os05t0247900-01 | Rice | plastid | 78.78 | 79.79 |
| Zm00001d013828_P002 | Maize | plastid | 79.93 | 78.84 |
| EER91354 | Sorghum | plastid | 80.28 | 78.38 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 65.51 | 65.36 |
| KRH25617 | Soybean | nucleus | 62.86 | 62.64 |
| VIT_12s0028g03440.t01 | Wine grape | plastid | 62.98 | 62.47 |
| AT1G03750.1 | Thale cress | plastid | 59.75 | 60.09 |
| PGSC0003DMT400082782 | Potato | plastid | 60.78 | 59.35 |
| Solyc07g053870.2.1 | Tomato | plastid | 60.44 | 59.08 |
| CDY37413 | Canola | mitochondrion, nucleus | 59.52 | 32.21 |
| CDY32510 | Canola | mitochondrion, nucleus | 59.52 | 32.13 |
| Bra032544.1-P | Field mustard | nucleus | 59.63 | 31.47 |
| TraesCS6B01G146000.1 | Wheat | endoplasmic reticulum, golgi | 8.88 | 22.99 |
| TraesCS6B01G351900.1 | Wheat | nucleus | 21.22 | 18.34 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 23.88 | 16.21 |
| TraesCS4B01G280600.1 | Wheat | nucleus | 15.34 | 13.93 |
| TraesCS2B01G164300.3 | Wheat | nucleus | 15.22 | 13.81 |
| TraesCS2B01G208700.1 | Wheat | cytosol | 14.42 | 13.65 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 21.34 | 11.66 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 13.15 | 10.74 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 14.53 | 10.05 |
| TraesCS1B01G476500.1 | Wheat | mitochondrion | 21.11 | 8.84 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 14.07 | 8.17 |
Protein Annotations
| MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF804 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS2B01G222000 | EnsemblPlants:TraesCS2B01G222000.1 | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:211865677..211875032
Molecular Weight (calculated)
98255.7 Da
IEP (calculated)
8.358
GRAVY (calculated)
-0.523
Length
867 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLNRLKETL LPCSSSAHSQ SQPRSPSPPR PPRRPPKASL SQQLLRLEAS YSLPAPPPSP PNPLNQKTAE DAAEQPTSSS EEDVAPRLRR RPAPPPAASF
101: EPRGPYEPLV LSPPGEHPVV QVPPSINCRL LAHQRDGVRF LYNLYRNNHG GVLGDDMGLG KTIQTIAFLS SVIGKDNNQG EKSTDKGKKS SPVLILCPTS
201: VIRNWENEFS EWANFSVAVY HGPNRDLVLE KIEGQGLEVL ITSFDTFRTR DKVLCDISWE LVVVDEAHRL KNEKSKLYTA CLGITTRKRF GLTGTIMQNK
301: IMELFNVFDW VVPGCLGDRE HFREYYDEPL KHGQRLSAPE RFVQVADKRK KHLVSVLKKF LLRRTKEETI GHLMLGKEDN IVFCRMSDVQ KRVYRRMLQQ
401: PDIQILVNKD LPCSCGSPLT QVECCKKIEP RGIIWSYLHR ENLDGCPLCP FCLVLPCLVK LQQISNHLEL IKPNPRDEIE KQKKDAELAA AVFDTDIELV
501: GGSAKSENFM GLSDSEHCGK MRALERLLSL WTLQGDKILL FSYSVRMLDI LEKFLIRKGY CFSRLDGSTP MNARQSLVDE FNKSPSKQVF LISTRAGNLG
601: VNLVSANRVV IFDPSWNPAQ DLQAQDRSFR FGQKRHVTVF RLLGAGSLEE LIYSRQIYKQ QLSNIAVSGK IEKRYFDGVQ DDKKFQGELF GICNLFRDLS
701: DKLFTSEIIE MHGEDEKAKT SEETGIREIV DTDLFGTQGQ MKSSTAAIGD ENQALADYGV VYAHRNEDVV NTRTHDDNNN ERDDGATEEC VERISEDLHG
801: KKQIKPSADR AELRSVEEQK RKEFSRIAAC VGMNDLEFSK WLLSVSPLQR QRVLDDHRKK RVSLKRK
101: EPRGPYEPLV LSPPGEHPVV QVPPSINCRL LAHQRDGVRF LYNLYRNNHG GVLGDDMGLG KTIQTIAFLS SVIGKDNNQG EKSTDKGKKS SPVLILCPTS
201: VIRNWENEFS EWANFSVAVY HGPNRDLVLE KIEGQGLEVL ITSFDTFRTR DKVLCDISWE LVVVDEAHRL KNEKSKLYTA CLGITTRKRF GLTGTIMQNK
301: IMELFNVFDW VVPGCLGDRE HFREYYDEPL KHGQRLSAPE RFVQVADKRK KHLVSVLKKF LLRRTKEETI GHLMLGKEDN IVFCRMSDVQ KRVYRRMLQQ
401: PDIQILVNKD LPCSCGSPLT QVECCKKIEP RGIIWSYLHR ENLDGCPLCP FCLVLPCLVK LQQISNHLEL IKPNPRDEIE KQKKDAELAA AVFDTDIELV
501: GGSAKSENFM GLSDSEHCGK MRALERLLSL WTLQGDKILL FSYSVRMLDI LEKFLIRKGY CFSRLDGSTP MNARQSLVDE FNKSPSKQVF LISTRAGNLG
601: VNLVSANRVV IFDPSWNPAQ DLQAQDRSFR FGQKRHVTVF RLLGAGSLEE LIYSRQIYKQ QLSNIAVSGK IEKRYFDGVQ DDKKFQGELF GICNLFRDLS
701: DKLFTSEIIE MHGEDEKAKT SEETGIREIV DTDLFGTQGQ MKSSTAAIGD ENQALADYGV VYAHRNEDVV NTRTHDDNNN ERDDGATEEC VERISEDLHG
801: KKQIKPSADR AELRSVEEQK RKEFSRIAAC VGMNDLEFSK WLLSVSPLQR QRVLDDHRKK RVSLKRK
001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
Arabidopsis Description
SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.