Factsheet for TraesCS6B01G146000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G107800.1	Wheat	endoplasmic reticulum	87.46	89.6
KRH59600	Soybean	cytosol, nucleus, plastid	54.63	23.34
KXG27526	Sorghum	cytosol	68.66	21.9
Zm00001d002950_P002	Maize	nucleus	67.46	20.85
KRH40956	Soybean	nucleus	57.31	18.64
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	25.67	18.34
VIT_04s0044g01680.t01	Wine grape	cytosol	56.42	18.12
AT5G63950.1	Thale cress	cytosol	58.51	17.98
CDX84469	Canola	cytosol, mitochondrion, nucleus, plastid	55.82	16.32
Bra024250.1-P	Field mustard	cytosol	55.52	16.13
CDY43772	Canola	mitochondrion	54.63	15.78
Solyc01g068280.2.1	Tomato	nucleus	54.33	14.98
GSMUA_Achr7P23270_001	Banana	nucleus	60.9	14.33
TraesCS2B01G222000.1	Wheat	plastid	22.99	8.88
TraesCS3B01G097000.1	Wheat	nucleus	32.24	8.46
TraesCS6B01G351900.1	Wheat	nucleus	22.39	7.48
TraesCS2B01G164300.3	Wheat	nucleus	17.91	6.28
TraesCS4B01G280600.1	Wheat	nucleus	17.61	6.18
TraesCS3B01G251000.1	Wheat	nucleus	19.1	6.03
TraesCS2B01G208700.1	Wheat	cytosol	16.12	5.9
TraesCS1B01G161400.5	Wheat	nucleus	26.57	5.61
TraesCS2B01G105400.1	Wheat	nucleus	17.61	4.7
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	18.81	4.22
TraesCS1B01G476500.1	Wheat	mitochondrion	25.97	4.2

Protein Annotations

EnsemblPlants:TraesCS6B01G146000.1	EnsemblPlantsGene:TraesCS6B01G146000	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase
InterPro:SNF2-like_sf	InterPro:SNF2_N	PANTHER:PTHR10799	PANTHER:PTHR10799:SF756	PFAM:PF00176	PFscan:PS51192
SEG:seg	SMART:SM00487	SUPFAM:SSF52540	TIGR:cd00046	MapMan:35.1	:

Description

No Description!

Coordinates

chr6B:-:146149610..146165188

Molecular Weight (calculated)

38494.9 Da

IEP (calculated)

6.005

GRAVY (calculated)

-0.093

Length

335 amino acids

Sequence
(BLAST)

001: MGLGKTMQVS AFLAGLFHSG LIRRALVVAP KTLLTQWIKE LSVVGLSHMI YEYYGSNMNI RDNELQHAFK EGGIVLTTYD IVRINYHLIR GDFYNDAGDE
101: EEEDFWNYVV LDEAHYIKNP NTQRAQSLFE ISCVHRIAIS GTPIQNNLMV QNKELRERIK PYFLRRMKSK VSLETGLTGD KKLPKKDELI IWLKLTDCQR
201: RLYKAFLNSE LVQFESEGNP LAALNVLKKI CDHPLILTQR AAEDILEGMD GDFSTRDIVM VEKMAMNLTD MAHDDDAVQF SQEVSCKLSF ILSLLPNLLE
301: EGHHVLIFSQ TRKMLNFIQV CCQFLECMPC FCDIL

Best Arabidopsis Sequence Match ( AT5G63950.1 )
(BLAST)

0001: MAENTASHRR KPRSLNDRHY SILQDLSAPP RQPPSSSHGE DEETKKSMIK LAGRRRLCKA LPKEDEADGY DDPDLVDFYS PVKGETSLDS AGIGNKFTSW
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL

Arabidopsis Description

CHR24Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.