CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05276	Soybean	cytosol, nucleus	26.45	29.44
Os01t0102800-01	Rice	cytosol, nucleus, plastid	84.78	25.52
KRH19578	Soybean	nucleus	95.65	21.55
CDX92882	Canola	nucleus	81.52	19.93
EES02658	Sorghum	nucleus	85.14	19.45
CDY51705	Canola	nucleus	81.52	19.41
Bra024192.1-P	Field mustard	nucleus	81.52	19.38
PGSC0003DMT400026641	Potato	nucleus	84.42	19.21
VIT_07s0005g03670.t01	Wine grape	nucleus	85.14	19.15
Solyc09g066480.2.1	Tomato	nucleus	84.06	19.13
GSMUA_AchrUn_...	Banana	cytosol	76.45	19.06
TraesCS3D01G082200.2	Wheat	nucleus	83.33	18.84
HORVU3Hr1G014660.2	Barley	nucleus	82.61	18.69
TraesCS3A01G081900.1	Wheat	nucleus	83.33	18.64
Zm00001d040203_P003	Maize	cytosol	83.33	18.3
AT2G18760.3	Thale cress	nucleus	82.25	18.22
TraesCS3B01G097000.1	Wheat	nucleus	83.33	18.01
KRH59600	Soybean	cytosol, nucleus, plastid	39.13	13.78
KRH25617	Soybean	nucleus	37.32	11.84
KRH40956	Soybean	nucleus	39.13	10.49
KRH77966	Soybean	nucleus	34.06	10.44
KRH39939	Soybean	nucleus	21.38	9.56
KRH34128	Soybean	nucleus	32.61	7.97
KRH27453	Soybean	cytosol	19.93	6.23
KRG92726	Soybean	nucleus	32.97	6.13
KRH20806	Soybean	cytosol	19.93	5.77
KRH23851	Soybean	mitochondrion, nucleus	23.19	5.49
KRH46527	Soybean	nucleus	20.65	4.97
KRH46528	Soybean	cytosol, extracellular, nucleus	22.1	4.9
KRG88505	Soybean	endoplasmic reticulum, nucleus	20.65	4.73
KRG97679	Soybean	nucleus	20.65	4.62
KRH73247	Soybean	nucleus	21.01	4.43
KRH23760	Soybean	mitochondrion	31.88	4.3
KRH40039	Soybean	mitochondrion	31.52	4.25
KRH77275	Soybean	cytosol	0.36	1.09
KRH28211	Soybean	mitochondrion	0.36	1.09

Protein Annotations

MapMan:12.4.1.4.3	MapMan:14.6.2.2	Gene3D:3.40.50.300	EMBL:ACUP02006104	EnsemblPlantsGene:GLYMA_10G038300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_C	InterPro:IPR001650	UniProt:K7LHA6
EnsemblPlants:KRH32203	ProteinID:KRH32203	ProteinID:KRH32203.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF837	SMART:SM00490	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI00029501E2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:3395894..3397098

Molecular Weight (calculated)

32089.6 Da

IEP (calculated)

9.726

GRAVY (calculated)

-0.551

Length

276 amino acids

Sequence
(BLAST)

001: MPYLLRRMKA DVNAQLPKKT EHVLFCSLTS EQVSAYRAFL ASTDVEQILD GRRNSLYGID VMRKICNHPN LLERDHAFDD PDYGNPKRSG KMKVVAQVLK
101: VWKEQDHHVL LFTQTQQMLD IFENFLTTSG HIYRRMDGLT PVKQRMALID EFNDSSEIFI FILTTKVGGL GTNLTGANRV IIYDPDWNPS TDMQARERAW
201: RIGQKRDVTV YRLITRGTIE EKVYHRQIYK HFLTNKILKN PQQKRFFKAR DMKDLFTPNV DGETGSTETS NIQSNI

Best Arabidopsis Sequence Match ( AT2G18760.4 )
(BLAST)

0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD

Arabidopsis Description

CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.