Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033315 | Potato | nucleus | 21.19 | 91.03 |
| Solyc01g068320.1.1 | Tomato | cytosol | 93.58 | 87.28 |
| Solyc01g068300.1.1 | Tomato | cytosol | 52.49 | 83.85 |
| PGSC0003DMT400096321 | Potato | nucleus | 14.77 | 73.6 |
| PGSC0003DMT400088837 | Potato | cytosol | 17.98 | 59.26 |
| PGSC0003DMT400004673 | Potato | nucleus | 84.91 | 57.75 |
| PGSC0003DMT400004629 | Potato | nucleus | 78.01 | 54.48 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 20.39 | 51.84 |
| PGSC0003DMT400017313 | Potato | nucleus | 94.7 | 48.96 |
| PGSC0003DMT400004672 | Potato | nucleus | 73.35 | 45.93 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 44.46 | 42.95 |
| PGSC0003DMT400038789 | Potato | nucleus | 71.43 | 40.24 |
| PGSC0003DMT400037430 | Potato | nucleus | 40.61 | 37.65 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 26.16 | 36.22 |
| KRH39939 | Soybean | nucleus | 34.03 | 34.36 |
| PGSC0003DMT400085944 | Potato | cytosol | 11.72 | 31.06 |
| PGSC0003DMT400085993 | Potato | cytosol | 8.19 | 30.36 |
| Zm00001d047708_P001 | Maize | cytosol | 8.35 | 30.23 |
| Os02t0650800-00 | Rice | cytosol | 40.61 | 27.0 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 40.13 | 26.51 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 39.97 | 23.58 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 39.97 | 23.47 |
| AT3G24340.1 | Thale cress | nucleus | 42.38 | 23.32 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 39.33 | 23.18 |
| KRH46527 | Soybean | nucleus | 42.05 | 22.82 |
| KRH23851 | Soybean | mitochondrion, nucleus | 42.7 | 22.81 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 39.17 | 21.42 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 36.44 | 20.9 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 41.41 | 20.71 |
| KXG31163 | Sorghum | nucleus | 40.29 | 19.64 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 39.81 | 19.53 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 43.18 | 19.08 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 43.02 | 18.05 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 43.18 | 18.02 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 43.02 | 18.0 |
| OQU77943 | Sorghum | mitochondrion | 42.05 | 17.97 |
| PGSC0003DMT400079488 | Potato | nucleus | 25.68 | 17.3 |
| PGSC0003DMT400061540 | Potato | nucleus | 30.82 | 14.93 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 16.85 | 14.46 |
| PGSC0003DMT400082782 | Potato | plastid | 16.53 | 11.6 |
| PGSC0003DMT400026641 | Potato | nucleus | 19.1 | 9.81 |
| HORVU3Hr1G014630.1 | Barley | cytosol, nucleus, plastid | 0.8 | 1.65 |
| Bra031634.1-P | Field mustard | nucleus | 0.64 | 0.69 |
| CDY06321 | Canola | nucleus | 0.64 | 0.69 |
| Os02t0762600-01 | Rice | cytosol | 0.16 | 0.65 |
| Os02t0161300-01 | Rice | extracellular | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| UniProt:M1A8T4 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400006745 | PGSC:PGSC0003DMG400006745 |
| EnsemblPlants:PGSC0003DMT400017302 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF858 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0002951593 | : |
Description
ATP-dependent helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400006745]
Coordinates
chr1:+:64188197..64191309
Molecular Weight (calculated)
70356.0 Da
IEP (calculated)
8.736
GRAVY (calculated)
-0.313
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSGDLSNCQ MGNHQLVLDE QIGLVCKVCS YVHLEIKYIF PSFAQRTRGR YERKHLGQSP SLLDVGGFRF SDSSAVQDPM INEEGTVWDL VPSSAKSTMY
101: PHQRGGFEFM WKNVAGDINL ERLRQPLSDS KGGCIISHPP GTGKTRLTIV FLQSYLKLFP KSRPVIIAPS SLLLNWEAEF QKWEVDIPFH NLNSKDFSLQ
201: EDEATVSVFR CLPHAGKRNP HLIRMVKLGS WVKGKSVLGI SYDLFRILTG DDGDGYAKPI REILLKYPGL LVLEEGHTAR NEQSLVWKAL KKSVQSLLQK
301: WASLSSSIDK NARALEELRD IISPLVHKCS ENVKKVSLPG IRDTVIHLKP TDLQKELLRR IPENPSSFYE QNLVSLISVH PSLVAKRKEF SDLESQLTER
401: GCRLDPDTGV KMKFVVELIR LCGGRKERVI IFSQLLDPLN LIKEQLNSLF GWTLGREILY MDGKLDVKQR QISINSLNDP KSDVKVLLAS IKACSEGISL
501: IGASRVVLLD VLWNPSVEQQ AISRAYRNGQ TKFVHVYCPV TSKWEVDKIE QQTRKKYHSD VLLSRDHEAK MDPSCSVSED NILESMVEHE GLRHIFEKLS
601: HAPRVVPSTT CLDSSNQPPK PSS
101: PHQRGGFEFM WKNVAGDINL ERLRQPLSDS KGGCIISHPP GTGKTRLTIV FLQSYLKLFP KSRPVIIAPS SLLLNWEAEF QKWEVDIPFH NLNSKDFSLQ
201: EDEATVSVFR CLPHAGKRNP HLIRMVKLGS WVKGKSVLGI SYDLFRILTG DDGDGYAKPI REILLKYPGL LVLEEGHTAR NEQSLVWKAL KKSVQSLLQK
301: WASLSSSIDK NARALEELRD IISPLVHKCS ENVKKVSLPG IRDTVIHLKP TDLQKELLRR IPENPSSFYE QNLVSLISVH PSLVAKRKEF SDLESQLTER
401: GCRLDPDTGV KMKFVVELIR LCGGRKERVI IFSQLLDPLN LIKEQLNSLF GWTLGREILY MDGKLDVKQR QISINSLNDP KSDVKVLLAS IKACSEGISL
501: IGASRVVLLD VLWNPSVEQQ AISRAYRNGQ TKFVHVYCPV TSKWEVDKIE QQTRKKYHSD VLLSRDHEAK MDPSCSVSED NILESMVEHE GLRHIFEKLS
601: HAPRVVPSTT CLDSSNQPPK PSS
0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
Arabidopsis Description
CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.