Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033315 | Potato | nucleus | 11.3 | 86.21 |
| Solyc01g060460.1.1 | Tomato | nucleus | 56.87 | 82.65 |
| PGSC0003DMT400096321 | Potato | nucleus | 8.32 | 73.6 |
| PGSC0003DMT400017302 | Potato | nucleus | 40.24 | 71.43 |
| PGSC0003DMT400004672 | Potato | nucleus | 63.65 | 70.75 |
| PGSC0003DMT400004673 | Potato | nucleus | 51.81 | 62.55 |
| PGSC0003DMT400004629 | Potato | nucleus | 49.28 | 61.1 |
| PGSC0003DMT400017313 | Potato | nucleus | 64.2 | 58.92 |
| PGSC0003DMT400088837 | Potato | cytosol | 9.49 | 55.56 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 11.75 | 53.06 |
| PGSC0003DMT400037430 | Potato | nucleus | 30.74 | 50.6 |
| PGSC0003DMT400085993 | Potato | cytosol | 6.24 | 41.07 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 23.69 | 40.62 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 16.0 | 39.33 |
| KRH39939 | Soybean | nucleus | 16.09 | 28.85 |
| Os02t0650800-00 | Rice | cytosol | 23.96 | 28.28 |
| PGSC0003DMT400085944 | Potato | cytosol | 5.97 | 28.09 |
| AT3G24340.1 | Thale cress | nucleus | 27.4 | 26.77 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 22.42 | 26.3 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 24.68 | 25.85 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 24.59 | 25.73 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 24.68 | 25.73 |
| KRH23851 | Soybean | mitochondrion, nucleus | 26.67 | 25.3 |
| KRH46527 | Soybean | nucleus | 25.14 | 24.22 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 24.77 | 24.06 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 22.97 | 23.39 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 25.95 | 23.03 |
| KXG31163 | Sorghum | nucleus | 26.13 | 22.61 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 25.68 | 22.36 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 27.67 | 21.7 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 27.58 | 20.54 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 27.58 | 20.43 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 27.49 | 20.42 |
| OQU77943 | Sorghum | mitochondrion | 26.22 | 19.89 |
| Zm00001d047708_P001 | Maize | cytosol | 2.98 | 19.19 |
| PGSC0003DMT400079488 | Potato | nucleus | 15.19 | 18.16 |
| PGSC0003DMT400061540 | Potato | nucleus | 18.35 | 15.79 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 9.04 | 13.77 |
| PGSC0003DMT400082782 | Potato | plastid | 9.4 | 11.71 |
| PGSC0003DMT400026641 | Potato | nucleus | 11.39 | 10.39 |
| Bra031634.1-P | Field mustard | nucleus | 1.36 | 2.58 |
| CDY06321 | Canola | nucleus | 1.36 | 2.58 |
| HORVU3Hr1G014630.1 | Barley | cytosol, nucleus, plastid | 0.54 | 1.98 |
| Os02t0161300-01 | Rice | extracellular | 0.9 | 1.96 |
| Os02t0762600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | UniProt:M1B7D3 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400014992 |
| PGSC:PGSC0003DMG400014992 | EnsemblPlants:PGSC0003DMT400038789 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF858 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000295F7BE | SEG:seg |
Description
ATP-dependent helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400014992]
Coordinates
chr1:+:44205718..44210693
Molecular Weight (calculated)
124688.0 Da
IEP (calculated)
5.145
GRAVY (calculated)
-0.708
Length
1106 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDSGDGSSVP RRRTRQQFLK YCVEFIEKRN KLNKNGNTTH SSTICCVDIG EDDHVSCGRK KRIKVEEKNT SCGGGDASMV RSLEKGKKKV DSAKKKFSPG
0101: TCESVMKRPF IQEISDSDSD DDDNDVEDDS EKEESDPDPD PDVVFIGDVA ADSIVNSGSR SGSWSNVGSV GLRSGTLNEA DDVISSTSSM CRTSERRKSE
0201: EHIDIEKSDD FVDPLKSQQK FTDTTDSSES ESEASSDEDN DHPEDKDYRV HESSTSSSSQ SDDIRSDCDD DYDGGKESEK DYLTTPTKNQ NNEEGKGFDD
0301: IRSGSGDDYD ESKESEDDDD LDLNCLAEQN NEKGKGSDYI RMKSEDDDLS CSTNKKSKEE GNKESNGRLV QKHRGRAYLL RPHSLSKSKK KLLNHGSCSR
0401: PVLLSDDEGS KSSSSEEGCE AGESVENAVV QKEQKDVVQK DRKIRKKILK DSEFLRFVVD SIINGDDHDK ITSPEEKRQV PVKEPLPLIF RFEDEEPLPL
0501: EKQEWQKEIE DLFAEMDMCT LESCIGFTNS SVLPMQGSKV SDCQMGNHQL VLDEQIGLIC KVCSHVHLEM KYIFPSFADR TRGRYGRKYF GDSSSLLDAG
0601: GFRYYDSSAV HDSAIYMEGT VWDLVPMNAK TTMYPHQREG FEFMWKNIAG DIILENLREP LSATVSVFHC LSRAGKRDPQ LIRMVKLRSW AKSKSVLGIS
0701: YDLFRILTGE DGDGYAKEIR EILLKLPGLL VLEEGHTARN DQSLMWQALN KVETEKRILL SGTPFQNNIK ELYNTLSVVS PKFAADLEHK WTSLSSCIDK
0801: NVRALEELRD MIAPLVHRCG ENVKKESLPG IRDTVIHLKP TDLQKRLLKR IPENPGSFYN QNAVSLISVH PSLVANRSEF SDLESQLKER GCRLDPNAGV
0901: KMKFAVELIR LCDGLNERVI IFSQLLDPLK LIKEQLNSLF NWTIGREILY MDGKLDVKQR QISINSLNDP KSDVKVLLAS IKACSEGISL VGASRVVLLD
1001: VLWNPSVEQQ AISRAYRNGQ TRVVHVYCPV TSKWEVDKIE QQTRKKYHSD VLLSRNEVNI CQMNPSYSLS DDNILEAMVQ HERLRHIFEK LSHAPRVVPT
1101: TCFPAR
0101: TCESVMKRPF IQEISDSDSD DDDNDVEDDS EKEESDPDPD PDVVFIGDVA ADSIVNSGSR SGSWSNVGSV GLRSGTLNEA DDVISSTSSM CRTSERRKSE
0201: EHIDIEKSDD FVDPLKSQQK FTDTTDSSES ESEASSDEDN DHPEDKDYRV HESSTSSSSQ SDDIRSDCDD DYDGGKESEK DYLTTPTKNQ NNEEGKGFDD
0301: IRSGSGDDYD ESKESEDDDD LDLNCLAEQN NEKGKGSDYI RMKSEDDDLS CSTNKKSKEE GNKESNGRLV QKHRGRAYLL RPHSLSKSKK KLLNHGSCSR
0401: PVLLSDDEGS KSSSSEEGCE AGESVENAVV QKEQKDVVQK DRKIRKKILK DSEFLRFVVD SIINGDDHDK ITSPEEKRQV PVKEPLPLIF RFEDEEPLPL
0501: EKQEWQKEIE DLFAEMDMCT LESCIGFTNS SVLPMQGSKV SDCQMGNHQL VLDEQIGLIC KVCSHVHLEM KYIFPSFADR TRGRYGRKYF GDSSSLLDAG
0601: GFRYYDSSAV HDSAIYMEGT VWDLVPMNAK TTMYPHQREG FEFMWKNIAG DIILENLREP LSATVSVFHC LSRAGKRDPQ LIRMVKLRSW AKSKSVLGIS
0701: YDLFRILTGE DGDGYAKEIR EILLKLPGLL VLEEGHTARN DQSLMWQALN KVETEKRILL SGTPFQNNIK ELYNTLSVVS PKFAADLEHK WTSLSSCIDK
0801: NVRALEELRD MIAPLVHRCG ENVKKESLPG IRDTVIHLKP TDLQKRLLKR IPENPGSFYN QNAVSLISVH PSLVANRSEF SDLESQLKER GCRLDPNAGV
0901: KMKFAVELIR LCDGLNERVI IFSQLLDPLK LIKEQLNSLF NWTIGREILY MDGKLDVKQR QISINSLNDP KSDVKVLLAS IKACSEGISL VGASRVVLLD
1001: VLWNPSVEQQ AISRAYRNGQ TRVVHVYCPV TSKWEVDKIE QQTRKKYHSD VLLSRNEVNI CQMNPSYSLS DDNILEAMVQ HERLRHIFEK LSHAPRVVPT
1101: TCFPAR
0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
Arabidopsis Description
CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.