Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37734 | Canola | nucleus | 92.87 | 94.71 |
| CDY16534 | Canola | nucleus | 44.36 | 78.44 |
| CDY67491 | Canola | cytosol | 15.05 | 73.42 |
| AT2G21450.2 | Thale cress | nucleus | 76.65 | 71.81 |
| CDX89710 | Canola | nucleus | 46.17 | 41.2 |
| CDX77430 | Canola | nucleus | 22.96 | 26.3 |
| CDY29038 | Canola | nucleus | 5.84 | 25.57 |
| CDY59589 | Canola | nucleus | 5.84 | 25.57 |
| CDX93009 | Canola | nucleus | 23.87 | 18.97 |
| CDX94823 | Canola | nucleus | 23.35 | 18.48 |
| CDY66441 | Canola | nucleus | 24.38 | 18.2 |
| CDX92463 | Canola | nucleus | 26.07 | 15.89 |
| CDY56857 | Canola | cytosol | 25.94 | 15.81 |
| CDX78226 | Canola | cytosol | 3.76 | 15.68 |
| CDY47279 | Canola | nucleus | 24.12 | 13.91 |
| CDX99258 | Canola | nucleus | 15.56 | 13.23 |
| CDY10115 | Canola | nucleus | 23.61 | 13.2 |
| CDX92308 | Canola | nucleus | 15.43 | 13.06 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 16.08 | 10.82 |
| CDY43772 | Canola | mitochondrion | 16.08 | 10.69 |
| CDX95047 | Canola | nucleus | 19.97 | 10.41 |
| CDX93550 | Canola | nucleus | 19.84 | 10.25 |
| CDX92882 | Canola | nucleus | 13.75 | 9.39 |
| CDY51705 | Canola | nucleus | 13.88 | 9.23 |
| CDY22674 | Canola | nucleus | 9.08 | 9.09 |
| CDY37413 | Canola | mitochondrion, nucleus | 15.56 | 7.49 |
| CDY32510 | Canola | mitochondrion, nucleus | 15.56 | 7.47 |
| CDX73492 | Canola | mitochondrion | 13.62 | 5.05 |
| CDX78225 | Canola | mitochondrion | 10.38 | 3.96 |
| CDY06321 | Canola | nucleus | 1.82 | 2.41 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 0.26 | 0.51 |
Protein Annotations
| MapMan:12.4.1.3.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078GEI8 | UniProt:A0A078GEI8 | EnsemblPlants:CDY23754 |
| ProteinID:CDY23754 | ProteinID:CDY23754.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00024090001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF807 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI0004EDBDC1 | SEG:seg | : | : | : | : |
Description
BnaC04g43680DBnaC04g43680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEI8]
Coordinates
chrLK032148:+:235152..237986
Molecular Weight (calculated)
87792.1 Da
IEP (calculated)
6.436
GRAVY (calculated)
-0.475
Length
771 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGTDQSLPF STARNLPWIL RSESKRISQS ELAKRPDPFF LPDLLDGFEE SKYGWLADDV KRLCELKRKL LNGSVSVEET ETRQKKEKPD DVLSQESVTI
101: GGCSGSESYN EEDSSKTPTD DDNGTHLYGV GEEEEEAELW RQMAFAQESS KVTVENVQDN DPKQTEDCEH SFIYKDDVGE VCRVCGLIKT PIESIIEVVY
201: YKPKRSRRTY TREQEEDTET TRMDFTETHH SSSHPNNILG DKMFIHPRHD NEMRPHQIEG FKFLCNNLAS NEPGGCILAH APGSGKTFLL ISFLQSFMAM
301: DPQAKPLIVL PKGIIEQQLK VLREWVEERS ILFLGYQQFA KIICDDSINI DDEVSEDCKR ILLEKPTLLI LDEGHTSRNK ETNLLISLAR VKTRRKVVLT
401: GTLFQNNVEE VFNILNLVRP KFLKRHREIV SRIMSKAEIP SGKHMNQSSI ENTFFAAVEL TLSRESSAKA SMIKDLREMT RHVLHYHKAD FKGLLPGLSE
501: FTVMLNLSPL QRDEIKGLRE MDLFKQISLG AALYIHPKLK AFLEANPSNG EKGFADNLLK KLDTLLKKIN VKDGAKMKFF LNLVSLCEST GEKLLVFSHY
601: IIPLKTLERL MTLTKRWRVG KEMFTITGDS SSGEREMSME RFNTSPDARV FFGSIKACGE GISLVGASRV LILDVHLNPS VTQQAVARAY RPGQKRRVYA
701: YRLVAADSPE EESYETCSRK EMMSKMWFEW NVGCGGGRDE FGFRGVDVDQ SGDVFLETTK MKEDIKSLYT R
101: GGCSGSESYN EEDSSKTPTD DDNGTHLYGV GEEEEEAELW RQMAFAQESS KVTVENVQDN DPKQTEDCEH SFIYKDDVGE VCRVCGLIKT PIESIIEVVY
201: YKPKRSRRTY TREQEEDTET TRMDFTETHH SSSHPNNILG DKMFIHPRHD NEMRPHQIEG FKFLCNNLAS NEPGGCILAH APGSGKTFLL ISFLQSFMAM
301: DPQAKPLIVL PKGIIEQQLK VLREWVEERS ILFLGYQQFA KIICDDSINI DDEVSEDCKR ILLEKPTLLI LDEGHTSRNK ETNLLISLAR VKTRRKVVLT
401: GTLFQNNVEE VFNILNLVRP KFLKRHREIV SRIMSKAEIP SGKHMNQSSI ENTFFAAVEL TLSRESSAKA SMIKDLREMT RHVLHYHKAD FKGLLPGLSE
501: FTVMLNLSPL QRDEIKGLRE MDLFKQISLG AALYIHPKLK AFLEANPSNG EKGFADNLLK KLDTLLKKIN VKDGAKMKFF LNLVSLCEST GEKLLVFSHY
601: IIPLKTLERL MTLTKRWRVG KEMFTITGDS SSGEREMSME RFNTSPDARV FFGSIKACGE GISLVGASRV LILDVHLNPS VTQQAVARAY RPGQKRRVYA
701: YRLVAADSPE EESYETCSRK EMMSKMWFEW NVGCGGGRDE FGFRGVDVDQ SGDVFLETTK MKEDIKSLYT R
001: MVGTNQFSFS KPRETPWNLR SRSRSITQEE LAKRPDPFCL PNLLDGLEDG LYGRLADDVK RLCKLRQEYL NGSISLEDIE ARQDNKRAKS SHNLIIDSDD
101: ELPQESPLEK RLKKLKEVIV VKNGDSSGSD SSPQGYDEED SSRNSTDIDN QSLYVDAEEE EELWRKMAFA QESIKVTVED SQSNDHKQIE DCDHSFICKD
201: DIGEVCRVCG LIKKPIESMI EVVFNKQKRS RRTYMREKEN GETSRDFSGI QSSHTNILGE KMFIHPWHDQ EMRPHQTEGF RFLCNNLAAD EPGGCILAHA
301: PGSGKTFLLI SFLQSFMAMD PQARPLVVLP KGIIESWKRE FTLWEVEKIP LLDFYSVKAE SRKQQLKVLG QWIKERSILF LGYQQFTRII CDDNFEAASE
401: DCKLILLEKP TLLILDEGHT SRNKETYMLS SLARVKTRRK VVLTGTLFQN NVEEVFNILD LVRPKFLKRP GTREIVSRIM SKAEIPRGKQ VNQSSSSIEG
501: TFFAAVELTL QRSTNFSAKA SLIKDLREMT RNILHYHKAD FSGLLPGLSE FTVMLNLSSI QRDEVKGLRK MELFKQISLG AALYIHPKLK SFLEENPSNG
601: EKGFSDNNTT VMKLDKMLKK INVRDGVKMK FFLNLLALCE STGEKLLVFS QYIVPIKTLE RLMSSMKGWR LGKEMFTITG DSSNEQREWS MERFNNSLEA
701: KVFFGSIKAC GEGISLVGAS RVLILDVHLN PSVTQQAVAR AYRPGQKRKV YAYKLVAADS PEEENYETCT RKEMMSKMWF EWNVGSGRED FGFRAIDADH
801: SGDAFLETTK MKEDIKCLYT KVN
101: ELPQESPLEK RLKKLKEVIV VKNGDSSGSD SSPQGYDEED SSRNSTDIDN QSLYVDAEEE EELWRKMAFA QESIKVTVED SQSNDHKQIE DCDHSFICKD
201: DIGEVCRVCG LIKKPIESMI EVVFNKQKRS RRTYMREKEN GETSRDFSGI QSSHTNILGE KMFIHPWHDQ EMRPHQTEGF RFLCNNLAAD EPGGCILAHA
301: PGSGKTFLLI SFLQSFMAMD PQARPLVVLP KGIIESWKRE FTLWEVEKIP LLDFYSVKAE SRKQQLKVLG QWIKERSILF LGYQQFTRII CDDNFEAASE
401: DCKLILLEKP TLLILDEGHT SRNKETYMLS SLARVKTRRK VVLTGTLFQN NVEEVFNILD LVRPKFLKRP GTREIVSRIM SKAEIPRGKQ VNQSSSSIEG
501: TFFAAVELTL QRSTNFSAKA SLIKDLREMT RNILHYHKAD FSGLLPGLSE FTVMLNLSSI QRDEVKGLRK MELFKQISLG AALYIHPKLK SFLEENPSNG
601: EKGFSDNNTT VMKLDKMLKK INVRDGVKMK FFLNLLALCE STGEKLLVFS QYIVPIKTLE RLMSSMKGWR LGKEMFTITG DSSNEQREWS MERFNNSLEA
701: KVFFGSIKAC GEGISLVGAS RVLILDVHLN PSVTQQAVAR AYRPGQKRKV YAYKLVAADS PEEENYETCT RKEMMSKMWF EWNVGSGRED FGFRAIDADH
801: SGDAFLETTK MKEDIKCLYT KVN
Arabidopsis Description
CHR34chromatin remodeling 34 [Source:TAIR;Acc:AT2G21450]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.