Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G178900.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5B01G171700.1 | Wheat | nucleus | 99.03 | 99.03 |
| Os09t0280600-01 | Rice | nucleus | 90.82 | 90.82 |
| EER98621 | Sorghum | cytosol | 89.86 | 89.86 |
| GSMUA_Achr9P00140_001 | Banana | cytosol | 77.29 | 83.33 |
| Zm00001d005140_P003 | Maize | golgi, mitochondrion, nucleus | 90.34 | 72.2 |
| KRH74183 | Soybean | cytosol | 74.88 | 71.1 |
| VIT_11s0016g02770.t01 | Wine grape | cytosol | 70.05 | 69.05 |
| AT4G29170.1 | Thale cress | cytosol | 72.46 | 65.22 |
| Solyc12g008680.1.1 | Tomato | cytosol | 75.85 | 64.88 |
| PGSC0003DMT400000930 | Potato | cytosol, golgi, nucleus | 75.36 | 63.16 |
| Bra024159.1-P | Field mustard | cytosol | 65.7 | 62.67 |
| CDX80742 | Canola | cytosol | 29.47 | 51.26 |
| CDY30231 | Canola | mitochondrion | 72.46 | 50.17 |
| CDY47782 | Canola | cytosol, golgi, mitochondrion, plastid | 71.98 | 44.48 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G174300.1 | EnsemblPlantsGene:TraesCS5A01G174300 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006302 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009553 | GO:GO:0009555 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0010212 | InterPro:Mnd1 | ncoils:Coil | PFAM:PF03962 | PIRSF:PIRSF026991 |
| SEG:seg | MapMan:13.3.6.4.5.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:367593606..367598324
Molecular Weight (calculated)
24118.4 Da
IEP (calculated)
4.712
GRAVY (calculated)
-0.802
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKKRGLSLE EKREQMLQIF YESQDFYLLK ELEKMGPKKG VISQSVKDVV QSLVDDDLVL RDKIGTSVYF WSLPSCAGNQ LRTTYNKLES DLSNSKKRYM
101: ELLEQRDDLK RGREDTDERE DALEELKAVE LRHKKLKEEL AAYADSDPSA LEAMKDATEV AHSAANRWTD NIFTLQQWCS TTFPQAKEQL EHMYKEVGIT
201: EDFEYLQ
101: ELLEQRDDLK RGREDTDERE DALEELKAVE LRHKKLKEEL AAYADSDPSA LEAMKDATEV AHSAANRWTD NIFTLQQWCS TTFPQAKEQL EHMYKEVGIT
201: EDFEYLQ
001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA
Arabidopsis Description
MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.