Factsheet for VIT_11s0016g02770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03580.t01
VIT_01s0010g03590.t01
VIT_01s0011g03320.t01
VIT_02s0012g01020.t01
VIT_05s0020g04170.t01
VIT_07s0104g00880.t01
VIT_11s0016g00340.t01
VIT_11s0016g02770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29170.1	VIT_01s0011g03320.t01	AT1G13330.1	16763194
AT4G29170.1	VIT_02s0012g01020.t01	AT1G32530.1	19187040
AT4G29170.1	VIT_01s0010g03580.t01	AT1G67370.1	17937504
AT4G29170.1	VIT_01s0010g03590.t01	AT1G67370.1	17937504
AT4G29170.1	VIT_05s0020g04170.t01	AT3G22880.1	17937504
AT4G29170.1	VIT_07s0104g00880.t01	AT3G29350.1	17937504
AT4G29170.1	VIT_11s0016g02770.t01	AT4G29170.1	17937504
AT4G29170.1	VIT_11s0016g00340.t01	AT5G20850.1	17937504

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00140_001	Banana	cytosol	72.86	79.69
KRH74183	Soybean	cytosol	77.62	74.77
EER98621	Sorghum	cytosol	70.0	71.01
Os09t0280600-01	Rice	nucleus	70.0	71.01
Bra024159.1-P	Field mustard	cytosol	73.33	70.97
TraesCS5A01G174300.1	Wheat	cytosol	69.05	70.05
TraesCS5D01G178900.1	Wheat	cytosol	69.05	70.05
TraesCS5B01G171700.1	Wheat	nucleus	68.57	69.57
Solyc12g008680.1.1	Tomato	cytosol	76.67	66.53
AT4G29170.1	Thale cress	cytosol	72.38	66.09
PGSC0003DMT400000930	Potato	cytosol, golgi, nucleus	75.24	63.97
CDX80742	Canola	cytosol	32.38	57.14
Zm00001d005140_P003	Maize	golgi, mitochondrion, nucleus	68.57	55.6
CDY30231	Canola	mitochondrion	72.86	51.17
CDY47782	Canola	cytosol, golgi, mitochondrion, plastid	74.29	46.57

Protein Annotations

EntrezGene:100264497	wikigene:100264497	MapMan:13.3.6.4.5.1	ProteinID:CBI27966	ProteinID:CBI27966.3	ncoils:Coil
UniProt:D7TBD1	EMBL:FN595756	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006302	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009553	GO:GO:0009555	GO:GO:0009628
GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	EntrezGene:LOC100264497	wikigene:LOC100264497	InterPro:Mnd1
PFAM:PF03962	PIRSF:PIRSF026991	UniParc:UPI0001984225	ArrayExpress:VIT_11s0016g02770	EnsemblPlantsGene:VIT_11s0016g02770	EnsemblPlants:VIT_11s0016g02770.t01
unigene:Vvi.21760	RefSeq:XP_002283092	RefSeq:XP_002283092.2	SEG:seg	:	:

Description

Meiotic nuclear division protein 1 homolog [Source:UniProtKB/TrEMBL;Acc:D7TBD1]

Coordinates

chr11:-:2179492..2186400

Molecular Weight (calculated)

23878.1 Da

IEP (calculated)

4.566

GRAVY (calculated)

-0.658

Length

210 amino acids

Sequence
(BLAST)

001: MLEIFYESQN FFLLKELEKL GPKKGVISQS VKDVVQSLVD DDLVAKDKIG TSVYFWSLPS CAGNQLRNVH RKLESDLQSG KKRLSELADQ CDTLKKGREE
101: SDEREEALGE LKAIELKHKE LKDEMGQYSD NDPAAFEEMK KAIEVAHAAA NRWTDNIFTL RQWCSNNFPE AKEQLEHMYK EVGITDDFDY LELSTVLPGT
201: VGNQMAEGNP

Best Arabidopsis Sequence Match ( AT4G29170.1 )
(BLAST)

001: MSKKRGLSLE EKREKMLQIF YESQDFFLLK ELEKMGPKKG VISQSVKDVI QSLVDDDLVA KDKIGISIYF WSLPSCAGNQ LRSVRQKLES DLQGSNKRLA
101: ELVDQCEALK KGREESEERT EALTQLKDIE KKHKDLKNEM VQFADNDPAT LEAKRNAIEV AHQSANRWTD NIFTLRQWCS NNFPQAKEQL EHLYTEAGIT
201: EDFDYIELSS FPLSSSHEAD TAKQLVQDEA

Arabidopsis Description

MND1Meiotic nuclear division protein 1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8GYD2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.