Factsheet for VIT_02s0012g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g03320.t01
VIT_02s0012g01020.t01
VIT_11s0016g02770.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	VIT_01s0011g03320.t01	AT1G13330.1	19187040
AT1G32530.1	VIT_02s0012g01020.t01	AT1G32530.1	19187040
AT1G32530.1	VIT_11s0016g02770.t01	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04325	Soybean	nucleus	63.62	67.75
KRH58212	Soybean	nucleus	66.67	67.22
Bra005352.1-P	Field mustard	nucleus	24.76	58.12
CDX84219	Canola	mitochondrion, nucleus	46.61	56.93
AT2G35330.1	Thale cress	endoplasmic reticulum	56.43	55.28
CDY31680	Canola	mitochondrion, nucleus	43.15	55.03
PGSC0003DMT400052886	Potato	nucleus	54.63	54.63
Bra023274.1-P	Field mustard	nucleus	51.73	54.44
CDX93827	Canola	cytosol	51.73	54.44
KRH28281	Soybean	nucleus, plastid	49.93	53.32
CDY01268	Canola	cytosol	50.48	53.13
AT1G32530.1	Thale cress	cytosol	51.87	52.74
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	47.16	50.74
Solyc08g006980.2.1	Tomato	nucleus	50.21	50.14
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	46.2	49.34
Solyc08g077100.2.1	Tomato	nucleus	26.83	45.86
KXG35515	Sorghum	mitochondrion	34.02	38.2
Zm00001d020292_P001	Maize	mitochondrion, nucleus	33.2	37.44
TraesCS5A01G189000.1	Wheat	mitochondrion	33.61	36.87
TraesCS5D01G202000.1	Wheat	mitochondrion	33.61	36.87
TraesCS5B01G194700.1	Wheat	mitochondrion	33.47	36.72
Os09t0371700-01	Rice	nucleus	10.51	35.68
HORVU5Hr1G058760.1	Barley	plastid	32.5	32.41
OQU93157	Sorghum	plastid	9.27	30.59
VIT_05s0020g02320.t01	Wine grape	nucleus	32.92	26.74

Protein Annotations

EntrezGene:100249004	wikigene:100249004	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB57918	ProteinID:CCB57918.1
ncoils:Coil	UniProt:F6HTA8	EMBL:FN596247	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567
GO:GO:0016579	GO:GO:0016740	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100249004	wikigene:LOC100249004	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044
PANTHER:PTHR10044:SF133	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00015C8FF8	ArrayExpress:VIT_02s0012g01020	EnsemblPlantsGene:VIT_02s0012g01020
EnsemblPlants:VIT_02s0012g01020.t01	RefSeq:XP_002281049	RefSeq:XP_002281049.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr2:+:6980595..6987501

Molecular Weight (calculated)

80912.3 Da

IEP (calculated)

6.341

GRAVY (calculated)

-0.563

Length

723 amino acids

Sequence
(BLAST)

001: MGCTVREKHI RTTRRPRSVK TDNDHASAFD RASISKSIFD AGLKPLGHHV GVHDSGQNPH PNPNFDDSGW GYCTEEQLEE ILLKNLEFLY NEAISKLVAL
101: GYDDDVALKA ILRNGHCYGG MDVLTNILHN SLAYLNSNCG GGSSNVNSDE AEPVFSDLRQ LEEYSLAGMI CLLQQVRPHL TKGDAMWCLL MCDLHVGRAS
201: TIEIPVLPSP INNNGCGGPV NSNANVESVN SSSSVGVAVP PLCKFHGGWG FGNGPVSEFP ANGLFQCSTD VTLQRDIECP KRFNLSPSMK SLLKRNVAMF
301: AAGFRASSKQ LQTQSQACPS SVSSVDATTG IVSGPEVPVE QYEDPNNSKN LDMVNTVLSK FREMNLDENL EFVAEDQKDE MVLTLIHQIK ELDRQVKERR
401: EWAHQRAMQA ARKLSHDLTE LKMLRMEMEE TQQLKKGKQT LEDTTMKRLS DMENALRKAS GQVDRANAAV RRLETENAEI RAEMEASKLS ASESVLTCLE
501: VAKREKKCLK RLLAWEKQKT KLQEEIGEEK RKIVDLQQQM VRVEQAQKEA EVKWRQDLKA KELAFVQVEE ERRAKEAAEA NNKRKLEALR LKIEIDFQRH
601: KDDLQRLEQE LSRLKVSAQS TELVHPLNTL PNRDCEGAKP QGETIARLLH ELDKLEDSSE KGVNSDRECI ICLKDEVSVV FLPCAHEVLC ANCNEDYGKK
701: GKATCPSCRA PIEQRIRTFG ASS

Best Arabidopsis Sequence Match ( AT2G35330.2 )
(BLAST)

001: MGCTVREKHV RPNRKTRSVK PEFDPCCLLD RTALSKSIVE SSLKHLVYHP GLLDSCPESN PSGSFEDNNG WGYCTEEQLE DILLKHLEYL YNEAISKLVG
101: SGYDEDVALR AVLSNGYCYG GMDVMTNILH NSLAYLKSNT GEGSNVNNED QSETVFTDLR QLEEYSLAGM VYLLQQVKPN LSKGDAMWCL LMSELHVGRA
201: STMDIPSSGK GDSSNVGVGG ASSTVNGVGG AIAPALCRFH GGWGFGNGKG PKFSGNGFSL HSEELTLQRE IDCPRRFNLS PSMKSLLREN VAAFAAGYRA
301: SMEQKKQVQM QSETSGTSLS CTAAATHSEK CEQPHVFGSE ECFSSVLEKF RDLNLDDNVD SAPEELKDDA LIGLLQQVQD LKKQLKERKD WAQKKAMQAA
401: QKVSDELSEL KSLRSEREEI QRVKKGKQTR EDSTLKKLSE MENALRKASG QVDKANAVVR ALENESAEIR AEMEASKLSA SESLTACMEA SKKEKKCLKK
501: LLAWEKQKMK LQDEITAEKE KIKALNRALA QITQEEKEYE AKWRQEQKAK EQVLAQVEEE QRSKEAIEAS NKRKVESLRL KIEIDFQRHK DDLQRLEQEL
601: SRLNKASSTD SSLQSNNTSH TKVKSDKSKG ETMSKLLEEL NRLDGSYEKE ANYDRECLIC MKDEVSVVFL PCAHQVVCAS CSDSFMGSGK ATCPCCRAPV
701: QQRIRVFGAS S

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.