Factsheet for Os09t0371700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os09t0280600-01
Os09t0371700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G32530.1	Os09t0371700-01	AT1G32530.1	19187040
AT1G32530.1	Os09t0280600-01	AT4G29170.1	19187040

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005352.1-P	Field mustard	nucleus	34.27	23.7
TraesCS5D01G202000.1	Wheat	mitochondrion	71.83	23.22
TraesCS5A01G189000.1	Wheat	mitochondrion	71.83	23.22
KXG35515	Sorghum	mitochondrion	69.95	23.14
TraesCS5B01G194700.1	Wheat	mitochondrion	70.89	22.91
Zm00001d020292_P001	Maize	mitochondrion, nucleus	67.14	22.31
HORVU5Hr1G058760.1	Barley	plastid	69.95	20.55
Solyc08g077100.2.1	Tomato	nucleus	30.52	15.37
GSMUA_Achr1P24020_001	Banana	mitochondrion, nucleus	43.66	13.84
GSMUA_Achr7P04700_001	Banana	mitochondrion, nucleus	41.78	13.15
CDY31680	Canola	mitochondrion, nucleus	34.74	13.05
CDX84219	Canola	mitochondrion, nucleus	34.27	12.33
PGSC0003DMT400052886	Potato	nucleus	38.5	11.34
Solyc08g006980.2.1	Tomato	nucleus	38.03	11.19
KRH04325	Soybean	nucleus	35.21	11.05
KRH28281	Soybean	nucleus, plastid	34.27	10.78
KRH58212	Soybean	nucleus	35.68	10.6
VIT_02s0012g01020.t01	Wine grape	nucleus	35.68	10.51
CDX93827	Canola	cytosol	33.33	10.33
Bra023274.1-P	Field mustard	nucleus	33.33	10.33
CDY01268	Canola	cytosol	32.86	10.19
AT2G35330.1	Thale cress	endoplasmic reticulum	34.27	9.89
AT1G32530.1	Thale cress	cytosol	32.39	9.7
Os05t0141500-01	Rice	nucleus, plastid	22.54	5.53
Os05t0141400-01	Rice	plastid	4.69	4.46
OQU93157	Sorghum	plastid	0.47	0.46

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EMBL:AK063842	ProteinID:BAD26406.1	ProteinID:BAF24936.1	ProteinID:BAT07776.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os09g0371700	EnsemblPlants:Os09t0371700-01	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR10044	PANTHER:PTHR10044:SF165	UniProt:Q6H4E3	SUPFAM:SSF57850	UniParc:UPI00003B46E4	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

Zinc finger, RING-type domain containing protein. (Os09t0371700-01)

Coordinates

chr9:+:12383168..12387955

Molecular Weight (calculated)

24312.0 Da

IEP (calculated)

9.108

GRAVY (calculated)

-1.011

Length

213 amino acids

Sequence
(BLAST)

001: MWDRQKAKLQ EDIAECKTKI TQVDRELAEI NKAIRNMEMK IREDTKAKEE NLALAEQEHA KRESAKANAE RRLEEIRQKT EVESRCFKDD IKRLEDELAR
101: LQKSMGVNHP TVPSTHPPGV ADRNSTRAPK QPTNQRPSPA SNKQSQAPTQ KTSRRRDCVI CKREEACVIL LQCAHQVLCV GCNKRHEEKG VARCPCCNAK
201: VEERIRVFGA SSN

Best Arabidopsis Sequence Match ( AT2G35330.1 )
(BLAST)

001: MIFTLSISVE FFFSFRFSYI HRRALTLMGC TVREKHVRPN RKTRSVKPEF DPCCLLDRTA LSKSIVESSL KHLVYHPGLL DSCPESNPSG SFEDNNGWGY
101: CTEEQLEDIL LKHLEYLYNE AISKLVGSGY DEDVALRAVL SNGYCYGGMD VMTNILHNSL AYLKSNTGEG SNVNNEDQSE TVFTDLRQLE EYSLAGMVYL
201: LQQVKPNLSK GDAMWCLLMS ELHVGRASTM DIPSSGKGDS SNVGVGGASS TVNGVGGAIA PALCRFHGGW GFGNGKGPKF SGNGFSLHSE ELTLQREIDC
301: PRRFNLSPSM KSLLRENVAA FAAGYRASME QKKQVQMQSE TSGTSLSCTA AATHSEKCEQ PHVFGSEECF SSVLEKFRDL NLDDNVDSAP EELKDDALIG
401: LLQQVQDLKK QLKERKDWAQ KKAMQAAQKV SDELSELKSL RSEREEIQRV KKGKQTREDS TLKKLSEMEN ALRKASGQVD KANAVVRALE NESAEIRAEM
501: EASKLSASES LTACMEASKK EKKCLKKLLA WEKQKMKLQD EITAEKEKIK ALNRALAQIT QEEKEYEAKW RQEQKAKEQV LAQVEEEQRS KEAIEASNKR
601: KVESLRLKIE IDFQRHKDDL QRLEQELSRL NKASSTDSSL QSNNTSHTKV KSDKSKGETM SKLLEELNRL DGSYEKEANY DRECLICMKD EVSVVFLPCA
701: HQVVCASCSD SFMGSGKATC PCCRAPVQQR IRVFGASS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7B1]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.